RNA id: XM_026916883.2


Basic Information

Item Value
RNA id XM_026916883.2
length 3099
RNA type mRNA
GC content 0.46
exon number 15
gene id il12rb2l
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11810207 ~ 11825779 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGCGTAGCCGTGAAGAGGGAGTTTGAGCAAGGTGGCGCTGGGAGCTCGGTCTTTACAAACTCGAGTCATTCATCTTACATGaggaaacttttattttttttgtttgtttccttcGGGTTCACTGTTCACTTCGGGTACAATAAGACGTCATGTAATGTCCAGAATTTGGGACTAATGAGTTGAAGTGTATTAAGCGAGGTGGTTGTTCTGTTACTTTGTTGTACCTCAGGAGGAGCAGAGTGTCAGTAATGCTGGTTATGCCAGTATCATGCTGTGAGCGATGATGGCAGTATGGCAAAGTCGAGCCCTAATTTTACCTCTCCTTACACTGCACATCATATGGCTCTCTCCACACGCCTCATTTGGATTGGCCGTCAGGTGCTGGTGGCGTAGGGTTTCATCTGTCATCCACAATGTGTCTATCGAGTGCCAAGCAGATCCTCAAGGAGCCATGCTGGAGTGTGACTTGTGTCACCTGCACGTGCTTCCACTTAACCCAGCAGCGCACGTCTCACAGACTGAGTGCAGCCACATGAGTGTGAGCTTCAGCACGCTTATTGATGCGCATGAAATGCAGAAGGCAGAGTGCATGCTGCTCTGTCCAGGACACacaccaggacacacacatttgcCCTGTTTGGTACAGGAAGGCTATCCTCCTCCCACCTGCTTAATTCCATTTAATGATGAAGACAGGAACATCCATTGCCGCTGGACAGGATCACTTAACCCCTTGATCCCAACCAACTTCACCCTTCACTGGAGAAATGATGACTATGGGTACAATGGCTCTAAAGACATAGGGGGGCGTGACAGTGTCATTATTCTACGGGCTGATTACCAAGCTCACGACTGCATTGAAATGTGGGTTTCTGCAACAAACACATTGGAGAAAATCAATTCAGAAACCCTCAAgaccaacacacacagtatcaTCCAGCCACCGCCTCCATCCATCATCAGGCATACTTCTGAACCCTTGGAGAttttttggagtgtgtctgaTGAAATAGAACACTCCGAACAATGGCAGTGTAAGGTCCAATACAAGAAGCTGTGTGACCAGGACTGGACAGAGGTTGAAGACACTTATGAAGTGAGCTTTATATTAGAAGATGCTGTGCCATTCACCACATACAAGTTCCGTGTTCGCTGTAGGCACGCTTCTGACGAGAGAGCGGTGATGAGTACCTGGAGCTCAGAGTTCACTGCTGAAACTCCTGCTGCAGctccagTGGGAATGCTTGATGTTTGGAGTGACTGTGATTCTATGTCAGATGAATCCAACTGCACCATCCTATGGAAGGAGATGCCCAAGCAGCAGGCAAGAGGCAACATCAACAGCTATGTGGTGACCATGAAACTGAGCAATGGCTCTGTGTTGAACATAAATGGATCAGTGTACACGTCTGCTGAGACATGTGCGCAATGTGGGCTGGACATCATTACAAAAGAACCATCAAACTTGGTTTCACATGCTCAGCAGAGCTATCTGACATGTCGTCAGGAGCAAAGCTGTTTTCATTACTGCCATCTCAGCGTTCCAGTTAAGGAGGTGAAGGGCATTGGAGTGACCGCTAACACAGCAGGGGGCAAGTCAAGTCCAGCACTTGTGGCGTTACCCAGAACTGGTTTGCTGCAACCAACTGTGGCGTTGGAGGTCAGAGCGAAGAGTCAGGAGCTAAATGTATCGTGGTCAGTGCTCCTTCCGTTCTCTGACAGTGTACAGGAATATGTGGTGCAGCACAAACCTGTAGGACTACCCTACACCCCATGCCTGAACTGGGTCAAGGTTCACAAAAACCAGACGTTTGTTATACTCAGAgGTCAAATGTCAAACTACACAGCCTACAACGTATCTCTGTATGCTATTGTCAGCAACCGCAGCTGTTTACTCACGTCTGCCATTGCCTACACTGTTGAAGGAGTGCCTCCAAAAGTCACAGACTTTCAAGCTATACCTACCTCTCCGTTTAGTGTAAACCTGACATGGACACCTATTCCACTTAATAAGAGCCAAGGACATATCATGCAATACCTAGTGGGCTTCTGTAAAGATGTAGTTGTGTACAACGTGAGCAGCGATAAGAGCAGTTTCCAGATCTCTAATCTGAATCCTGATCAGCAGTATGAAGTGTGGATCAGAGCTAAGACTAGTGCTGGAGAGGGAGAGAACGCAACTGCCTCTTTCACCACAACTTCCTCTGCTAACATTATCAAAATAGTGGTGGTCATAGTTGTGTTGGTTTTTATCACCCCTCTGGTCTTAATCATTTCAATTGTGTGGTATTTAAGGGCCAAGGTACCCGAATGGTTCTACAAAATTCCGGACCCCATCAACAGCAGTTCATTTAAACAGATGAGCAATCAGttctGGCACTCATGGCCTGTTTCTTCAGCCTCCATGGAGTATGGTCTAACCATTTCTCAGGTGGAGGTAGTTCCTGAGCCAGAAGTTGATCATGAACCTGAGGTGGAGCAGCCAGAGGAGCACAGGGAACACAGGGAGAGCAGAGGAAAAGAGTTGCAAGGATTCGGGGGGTTGGAGCAGAACAATTCCTGTACTACGTCATCAGAAAGAATACAGCCAAATGATTGACAGCAGTGATGAGGAGGGCAGACAAGATGAAGACGAGGAGTGGAATGAGGAGCCATTTCCTTCCGACTATGAGAAACATTTTTTGCCCTGCATTGTGGATGCATGATTCTTCTTTTGTGCCTGGAACAGAGCTTATTATGGCCTGTCATTTTTTGCtgcatatttaaaatgtgttatggatACACATTTGGGTTATCTTGAATGTTAAtacactgcaaaatattttgTGACAATCATCAGGATAATCAGCTATAATCATGACAGCATCTGCCTCAGGTATGATCAATGTGCCACTTAGGTTATAAAGGATTGAACACAACCTCGTGCACGTTGATCGACTGTATTTACTGGAAGAAGGTGCGAACAGGCATATGACTTGTCAATTTTGCACATGAGTAGCTTTCAATATGGTAGTTTATCAGAAACAACCAATTGTGGATAAAACCTCATGTGGTTTTATATCACTTTATAGATGCCtgtgaaatgtgcaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04668 TNF signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248316 lncRNA downstream 145078 11664485 ~ 11665129 (-) True G209646
TU248307 lncRNA downstream 162210 11642168 ~ 11647997 (-) True hmox1a
XR_003402897.2 lncRNA downstream 184139 11619540 ~ 11626068 (-) True LOC113527962
TU248298 lncRNA downstream 184394 11619646 ~ 11625813 (-) False LOC113527962
TU248294 lncRNA downstream 193019 11610634 ~ 11617188 (-) True G209624
XR_004579362.1 lncRNA upstream 19794 11845573 ~ 11879417 (-) True LOC117598828
TU248548 lncRNA upstream 242475 12068254 ~ 12068622 (-) True G209829
TU248549 lncRNA upstream 243034 12068813 ~ 12069180 (-) True G209830
TU248551 lncRNA upstream 244517 12070296 ~ 12070602 (-) True G209832
TU248558 lncRNA upstream 250893 12076672 ~ 12077073 (-) True G209839
XM_026916879.2 mRNA downstream 1191 11790575 ~ 11809016 (-) True smarca4a
XM_026916878.2 mRNA downstream 1191 11791354 ~ 11809016 (-) False smarca4a
XM_026916880.1 mRNA downstream 5386 11790575 ~ 11804821 (-) False smarca4a
XM_026916882.2 mRNA downstream 13211 11790575 ~ 11796996 (-) False smarca4a
XM_026915997.2 mRNA downstream 25160 11773079 ~ 11785047 (-) True ldlra
XM_026917039.2 mRNA upstream 506 11826285 ~ 11828107 (-) True rln3a
XM_026916024.2 mRNA upstream 137916 11963695 ~ 12012792 (-) False tmem104
XM_026916020.2 mRNA upstream 137916 11963695 ~ 12012790 (-) True tmem104
XM_026916022.2 mRNA upstream 138342 11964121 ~ 12012976 (-) False tmem104
XM_026916021.2 mRNA upstream 138342 11964121 ~ 12012791 (-) False tmem104
XR_003402968.1 other downstream 54284 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 109106 11699906 ~ 11701101 (-) False zgc:162612
XR_003402973.1 other downstream 244079 11566010 ~ 11566128 (-) True LOC113528658
XR_003402963.1 other downstream 273529 11536560 ~ 11536678 (-) True LOC113528647
XR_003402978.2 other downstream 377579 11432510 ~ 11432628 (-) True LOC113528663
XR_003402971.1 other upstream 199723 12025502 ~ 12025572 (-) True LOC113528656
TU248755 other upstream 474226 12300005 ~ 12315469 (-) False LOC113528332
TU248759 other upstream 508079 12333858 ~ 12339269 (-) True msrb1a
XR_004579428.1 other upstream 723050 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 723050 12548829 ~ 12559213 (-) False tom1

Expression Profile