RNA id: XM_034309992.1


Basic Information

Item Value
RNA id XM_034309992.1
length 2098
RNA type mRNA
GC content 0.45
exon number 11
gene id aldh3b1
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18836193 ~ 18843733 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGCGCGTGCACCGtggttttactgtgtgtttttatggaaCAGGAGAAATGTTTggactgttttttgtttgttttgttttgtctgttttaatGTGAATTTGTTTGCTGAGGCACTGACACCCGGAAACACCTCAGGACTGAAACCGGCGGTTTGGTTTTAacagcaacagagagagagagagagagaaagagcactGATTTTACCAAAGCTTCACAAAATAGACTCTAGGATTTTATCCAAGTGTGTTCTTGAAATGGAAAGTCAGAAGCAGGTGATTGAGAGACTGAGGGCTGCGTTCCGGTCCAACATGACCGTTCCCCTTCATTTCCGTCTCACTCAGCTGGAAGCTCTGCTGTCTTTACTAGAGGACAATGAGGCACAGATCTTAGAGGCACTGCATAAAGACCTCACCAAGCCCAAGTTTGAGGCAGTGCTGTCAGAAATCGACATGGTGGCCAATGAGATTCGTTATACCATCTGTAACTTGGAAACCTGGTTGCAGCCAAGCTATGTGGGAAAAAACTTGGCAACAAAACTAGATGATTGCTTTGTACGCAGAGAACCTTTAGGGGTTGTTTTGATAATCGGCGCATGGAACTATCCTCTCCAGCTCATTTTAGCACCACTGATTGGTGCTATTGCTGCAGGCAACTGTGCTGTTCTGAAGCCTTCAGAAATCAGTCAAGCAACTGAGCGACTCCTCTCAGAGCTAATACCAAAGTACCTGTCTCAGGAGTGCTTCGCTGTTATTTGTGGAGGAGCAGAGGAAACCAAATTATTGTTGCAGAACAGATTTGATCACATTTTCTACACAGGCTCTCAGGCGGTGGCACGGAGCATCCTGCAGGCAGCCGCAGTGCACCTCACCCCCGTCACGCTGGAGCTGGGCGGAAAATGCCCGTGCCTCATTTACGGCCGCATAGACATCAAGGCTGCTGCAAAGAGGCTTGTATGGGCCAAGTTTTTCAATGCAGGGCAGAGCTGTGTGGCACCAGATTATGTCCTGTGCACAGCAGAGATGCGAGATGCACTGATTCCCGGGATTGTAGAAGCATTGGAGAGCTTCTACGGGCCTCGGATTCAGGAGAGCCCAGACTATGGCCGAATTGTCACAGATAGACACTGGAACAGACTCATGGAGCTCCTGGGGAAGTCTCAAGGAAAGGTGGTTATAGGTGGAGAAGGCGTGAAAGACGACAAATACATTGATCCCACAGTGATTGTGGACTTGACAGAATCGGACGCTCTAATGCAAGAGGAAATTTTTGGCCCCATTCTTCCCATCCTCACTGTGGAGTCTATAGAGCAAGGCATCCGTTTCatcaatgagagagagaagccaTTGGCGCTCTATGTTTTTTCTGATCAGTCTCAGGTGGTGAAGACAGTATTAGAGCAAACCACCAGTGGAGGGTTTTGTTCAAATGATGGAATAGTTCACATGACACTTCCTGGTTTGCCTTTTGGAGGAGTAGGTGCAAGTGGGATGGGCAGTTATCACGGCCGCTGGGGTTTTGAGACTTTCAGCCACAGACGGGCGTGTATGCTGCGAGGCTGGGGACTCGAGCGCATCAGCATGTTACGGTATCCACCATACCAAGAGACGAGCCTGGGCTGGCTGCGCTGGGCCACGCAAACCAAAAAGAAGGGCTGGGGAGGATGCAGTGTCATGTGACTTTTGTCCTGTTTGCTGTATGGCTTTTAACAGTAACTCATTTTCTTGCTTGGTCAGTGGTAAGAAAGCAAGCACACAAGAACAATGCAAGAAATGAATGCTATGCTGTATCCTGTGGAGTTAAAAttatactttttctttcttctcttagTTAAAACACTACTTTCTACTAGATAACAGTCTTTCAATGGTAAGGCACACTGCATTACTGTGTTACAAATATGGAACTGCAGTCAGGATATTTGTGTCCCATTTACTGTCCCAATTAAAGTAAATGTTACATATATTCAAACTAATGTTACATATAGCAACATGTAAATAATCAAAGTACATGAGTTTACATTTGTGCCCTTGTGTGTTATACGGTTAAATTTCAATTatccttaaaaataaaacacaataaaaataaaaatacacttcA

Function

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252741 lncRNA downstream 8761 18823471 ~ 18827432 (-) True si:dkey-204f11.64
XR_004579422.1 lncRNA downstream 458938 18375684 ~ 18377255 (-) True LOC117598999
XR_004579431.1 lncRNA downstream 759806 18070785 ~ 18076387 (-) True LOC117599003
TU252323 lncRNA downstream 781978 18050735 ~ 18054215 (-) False mettl23
TU252898 lncRNA upstream 180445 19023758 ~ 19031157 (-) True G213549
TU252899 lncRNA upstream 181759 19025072 ~ 19072985 (-) False G213549
TU253100 lncRNA upstream 573871 19417184 ~ 19422415 (-) True G213716
TU253270 lncRNA upstream 820024 19663337 ~ 19663762 (-) True G213879
TU253468 lncRNA upstream 1097041 19940354 ~ 19984149 (-) False lyar
XM_026916137.2 mRNA downstream 8459 18823892 ~ 18827734 (-) False si:dkey-204f11.64
XM_026917230.2 mRNA downstream 17884 18803479 ~ 18818309 (-) False carm1
XM_026917228.2 mRNA downstream 17886 18802031 ~ 18818307 (-) True carm1
XM_026916191.2 mRNA downstream 43234 18790181 ~ 18792959 (-) True timm29
XM_026915999.2 mRNA downstream 79517 18735653 ~ 18756676 (-) True slc25a23b
XM_026917128.2 mRNA upstream 8143 18851456 ~ 18872146 (-) True gna13b
XM_026916703.2 mRNA upstream 59350 18902663 ~ 18915773 (-) True cog1
XM_026917282.2 mRNA upstream 78823 18922136 ~ 18936509 (-) True rogdi
XM_034310282.1 mRNA upstream 113736 18957049 ~ 18968781 (-) True scpep1
XM_026916936.2 mRNA upstream 263873 19107186 ~ 19126331 (-) False crlf3
TU252457 other downstream 458830 18376077 ~ 18377363 (-) False LOC117598999
TU252076 other downstream 982554 17828167 ~ 17853639 (-) True tsen54
TU252009 other downstream 1160909 17674827 ~ 17675284 (-) True G212750
TU251953 other downstream 1410292 17386211 ~ 17425901 (-) True G212700
XR_004579436.1 other downstream 1516474 17292851 ~ 17319719 (-) True LOC113528519
trnat-cgu_6 other upstream 232956 19076269 ~ 19076340 (-) True trnat-cgu_6
TU253095 other upstream 601676 19444989 ~ 19448334 (-) False rbbp6
TU253598 other upstream 1197110 20040423 ~ 20063490 (-) False slc2a9l2
trnal-aag_9 other upstream 1569536 20412849 ~ 20412930 (-) True trnal-aag_9
TU254170 other upstream 2171126 21014439 ~ 21027259 (-) True fgf2

Expression Profile