Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026916887.2 |
| length | 1189 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 7 |
| gene id | clpp |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 18829293 ~ 18836201 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| K01358 | clpP, CLPP; ATP-dependent Clp protease, protease subunit |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU252523 | lncRNA | upstream | 115667 | 18706417 ~ 18713626 (+) | True | G213221 |
| TU252491 | lncRNA | upstream | 263511 | 18517313 ~ 18565782 (+) | True | G213191 |
| TU252492 | lncRNA | upstream | 294949 | 18530359 ~ 18534344 (+) | True | G213192 |
| TU252294 | lncRNA | upstream | 401667 | 18425194 ~ 18427626 (+) | False | zgc:163143 |
| TU252548 | lncRNA | downstream | 10015 | 18846216 ~ 18898291 (+) | True | G213244 |
| TU252634 | lncRNA | downstream | 122829 | 18959030 ~ 18960740 (+) | True | G213314 |
| XR_004579329.1 | lncRNA | downstream | 243261 | 19079462 ~ 19082157 (+) | True | LOC117598754 |
| TU252799 | lncRNA | downstream | 243409 | 19079610 ~ 19081890 (+) | False | LOC117598754 |
| TU252813 | lncRNA | downstream | 271009 | 19107210 ~ 19161120 (+) | True | G213475 |
| XM_026916083.2 | mRNA | upstream | 27476 | 18793304 ~ 18801817 (+) | False | yipf2 |
| XM_034309923.1 | mRNA | upstream | 27476 | 18793305 ~ 18801817 (+) | True | yipf2 |
| XM_026917183.2 | mRNA | upstream | 131700 | 18633498 ~ 18697593 (+) | True | tnrc6c1 |
| XM_026917184.2 | mRNA | upstream | 131700 | 18633498 ~ 18697593 (+) | False | tnrc6c1 |
| XM_026917185.2 | mRNA | upstream | 131700 | 18670381 ~ 18697593 (+) | False | tnrc6c1 |
| XM_026916207.2 | mRNA | downstream | 41473 | 18877674 ~ 18899981 (+) | True | rgs9a |
| XM_034310205.1 | mRNA | downstream | 41473 | 18877674 ~ 18899981 (+) | False | rgs9a |
| XM_034310206.1 | mRNA | downstream | 42947 | 18879148 ~ 18899981 (+) | False | rgs9a |
| XM_034310064.1 | mRNA | downstream | 79653 | 18915854 ~ 18919942 (+) | False | smim22 |
| XM_026916707.2 | mRNA | downstream | 79665 | 18915866 ~ 18919942 (+) | False | smim22 |
| XR_004579361.1 | other | upstream | 487356 | 18184019 ~ 18341937 (+) | True | LOC113528485 |
| TU251743 | other | upstream | 1720018 | 17087291 ~ 17109275 (+) | False | srl |
| TU251142 | other | upstream | 2683909 | 16140330 ~ 16145384 (+) | False | LOC113527983 |
| TU251011 | other | upstream | 2860534 | 15918217 ~ 15968759 (+) | True | G211913 |
| trnar-ucu_8 | other | upstream | 3015962 | 15813242 ~ 15813331 (+) | True | trnar-ucu_8 |
| TU252614 | other | downstream | 78525 | 18914726 ~ 18919872 (+) | True | smim22 |
| TU252615 | other | downstream | 78525 | 18914726 ~ 18919872 (+) | False | smim22 |
| TU252829 | other | downstream | 307873 | 19144074 ~ 19145240 (+) | True | G213491 |
| XR_004579333.1 | other | downstream | 465154 | 19301355 ~ 19313218 (+) | True | gng13b |
| TU253379 | other | downstream | 1070001 | 19906202 ~ 19910165 (+) | False | LOC113528458 |
