RNA id: XM_034310193.1


Basic Information

Item Value
RNA id XM_034310193.1
length 4188
RNA type mRNA
GC content 0.45
exon number 11
gene id asic2
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5108421 ~ 5626980 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCAGAAGTCAGAGACTGGGTAGAGAGAGGATTAGTCATAGAAgaaaccaagaggccaaggGTGTGCCAGTGCCCATGATGGAGCTGAAAGACAGCTGTGCCAGCGAGGGCAGCCATGAAACAGAAAGCGCTGGCACAGGCAACCTGTCAGGCCCTTTGTCCTGGCACTTGTTTGCCCAGCGCAGCACGCTACATGGCCTGCGTTACGTTTTCCCACACCGTCGCTCCTCAGCACTGCGACGTCTGCTCTGGAGCGCAGCTCTACTGGCCTGTCTTGGTTTGTTGGCACTGGAGGCTGCGGAGCGTGTAGCCCACTTCCTGTCATATCCACATGTGGCTAGCGTGGGTGCAGTGCCTGCAACGAGCCTTGTGTTCCCTGCTGTCACTGTGTGCAACCTGAATGCCTACCGCTTCACACGGCTCACGCGTAATGACCTGTACCATGCAGGAGAATTGCTGGCGCTGCTTGACGTGCATCTGCATGTGCCCGAGCCACAGCTGGCCGAGCCCCACGTGCTTGACTTTCTCGCAGAGCGTGCCAATTTCAGTGGCTTCCGGCCCAAACCGTTTAGCATGCGCGAGTTCACTGAGCGCGTCGGCCATGACCTACACGAGATGATGCTTTACTGCCGCTATGAGGGTCAGGAGTGCAGCCACCGGGACTTCAAAACCGTTTTTACACGATATGGGAAGTGTTATATGTTCAACGCAGCTGAGGAGGGCAAGGCTTTGAGAACCACGATGAAAGGAGGGACTGGAAATGGCCTGGAGATCATGCTGGATATTCAGCAAGATGAGTACCTGCCTGTGTGGGGCGAGACAGAGGAGACGGCGTTTGAGGCAGGCGTGAGGGTGCAGATCCACAGTCAAGCTGAGCCTCCGTTTGTGCATGAGCTGGGCTTTGGGGTGGCTCCAGGGTTTCAAACTTTCGTAGCCACTCAGGAACAGCGGctGACGTACTTGCCGCCTCCATGGGGAGAGTGTGTGTCGCAGGCTCTGGGCTTCTTCGAGGTGTACAGTGTCACAGCGTGCCGTATTGAGTGTGAGACACGCTACATCGTGGAGAACTGTAACTGCAGGATGGTGTACATGCCCGGAGATTCTCCGTACTGCACTCCTGAACAGTATAAAGACTGTGCTGAACCTGCACTCGCCGCTCTTTCATCGGTGGAGGGCAGCAGCTGCATGTGCAGGAACCCGTGCAACATGACCCGCTACAACAAAGAGCTCTCCATGGTCAAGATCCCCAGCAAGACGTCAGCGCGCTACCTGGAGAAGAAGTTCAACAGATCGGAGAAGTATATCACGGACAACATCCTGGTGCTGGATGTCTTCTTTGAGGCTCTGAATTATGAGACCATTGAGCAGAAGAAAGCCTACGAGGTGGCTGGACTGCTAGGAGACATTGGAGGTCAGATGGGGTTGTTTATCGGCGCGAGCATACTGACAATCCTCGAGCTGTTTGACTATGCCTATGAGGTGGTGAAGGACAGAATCCTGGATCTTTTGAGTcgaggagaggaggaagagagtcGAGGGGAAGACGTGAGCACATGTGATCCAGTAGTGAATCATTCAGAGACGATCAGCCACACAGTCAGTGTTCCTTTACAGACCACTCTGGGGACGCTGGAGGAGATCGCCTGCTGAGAGCACTTCCCCTCCAGGGCAGCAGGAGGAGACAACAAATCCTCCTCACCGCCCCTGCTGCCGGGAACCCAGTCTGGGGAAGAGACATGAAatcaaaaaaagagaaaggaaaatgattcattttcccTTTTCGCATAAACTGCTACATGATCATTCTGTACAAACCCAAAAAGAAACTATGATGGCAGCTCTGGCAGGCAAGACAAGTACActgaaatctcacacacacactcacactcacactcacacaaacatacacactgacTCTCAAAGTCTTCTCCAAAGCTGAGACTGATGGACGAGAAGTGAGACACTTTAACTCCTAACTTCACACTAGTGTGAGAATGTGAACTGGCACAGGACatgagtgtgtaaatgcatCGTCAGTCTGCTGGGCTGCCATTTTAAAGTCTACTGCCAAAACTCAAAGAACTCCCAAACCGCAGAAGGACAAGAACCTTTGCATGTGTCAGTTTCTCTGGCTGAGCTGCGTTTCCCTCTCGCCTGCCTCTCGCTGAGACCATCGTTCCGCTTCCGTCTTGTGTCTCTGCATCTGATTATGTGCCAGTAGGGCTCTGTCCCAAACCCACAGCAGCACTCTTTCCTTTTCTGCATTCACGCACTCCTACCTGATTTCTGTTGCAGTATCAGAAAGCACTATGGATCCGAGGGACGTTTCTGACATCGTCACTTCATCATGTGACGGTCAATAAAGGAGTTTCCACCAGCCTTCATATTTCCCgaaagaggaaagaaggaaaacaaaGGAGGGAGATGGAAAAGTGTGTTGCTTAGTCAGAGAGATTAAGCCATAATTTCTGTTTATCTTACAGCAAAATGTCTTATTTTAAAAGTGAGGTTTTTAGTTTTTGCTCAGAGAGGCCAAATTTCACATCTCTAACATGCATCTCATTAAATCAGATCTTTATTTGGATCCTCttcatttctgcacattttcaACCCTGAAATTGAACAAGAGCAAAGAAATCAGGCGCCGTGAGGAATACAAGAGCAAGGGCACTGTCGCATATGTAATGTGTTTAAATCAAACCTTAGTGTGTTTATGCTTACAGGAAGTGATTGCCTTCAAGCTTCAAGCCTGCCTTCAAACAAACCCTAGTGCAGTTTAAACACAAGTCATCCCCGATTCAACCCAAGTGCAGAAATTAACCACTGCACAAAAGACACtgcaaatgttttgttttatattagtTTCTCCAGTCTTCTTTCAGCTGTAAAGTGAGATACACAATACCAAcccaaaaatgcaacagcaaatcagaaaacacaacaaacacaaaacagcacattcagaaacacaacagaaaaaccACACTATAAATGTGAAGATATcctgaataaaggaaaagttgtctaatatttcttattgtgAGATTATAACAAATATATGAACATTacacctatttctagacatattagCTACTTTCAAGCTTTAAAAGAGTCGTATTCTTTCGTTAGATGGCCTTGCTTCTTTCACGAAATCAATGCTTAAAATAAGCTAAATTCAAGCTTGACtaaaaaatgtctagaactTGGTTTAGTAATCttagatttgttaaaaaaaacattttattaaagagaAATAGTTGctttgcctatattcaagatagtTTTACTTGCAAAGACGTACTGCATATGATTTTTGTGGTGCAAAACACCACGGCAAATTtagaaaatgcaaaatgaataaacacgTCAGCATTAGCTTATCGAACATATCGATCACGTACTGGTCACTGATCATACACGGCGTATGACTATCACAAGGAAAAAGAAGTCTACCTTGTCAGTCTGTTATCTATATTAGTCTAATTTATCTAGTTTAGTTTAGCCTAGCAAAACAAAtgtaatgcttttctttttaattagtCTTTATAGTGAGGAGTAATTCATTCTTCTGAATAACCTGGCTTCCTTCAGGCGTGTTTTCAGCATTCACTTTAACGCAAAGTTGACAGCTTATCGAAAATATCATCATCCCCTtcataaacatatacacaaataaaagcatcacttattcattcatttatttgattcatttattctagTATTTCCTCTGACTGTAAAGATGCTGCAGCTCTCCAGTTTTCTCCGTAGCCGAGACTGACGCGCActgcagccaatcagcaacgaGCACGTCATGTTCAGTAAAGACCAACCCTTTCCGTATAAGTTAAAGTTCATCTGGTTCTGAATTTctgttgcatttttggtttAAGTTGTTCCATGTTTATGGTCCAGGCTAAAAGCCCCAGAAAAGTATCAAATTCACTCTGATTCCAATTCAGAGAATACACTACTCCGAAAAGACGTGCCCTGACTCCTGTTTCAGacaggaaaacacacagctgtgctttaaaccattttaaaatttcCATGTGCTTTTCACATGATTCTGCAGTGGCCTCGCACCTGAGAAGCACTTATTTCCTCTGGACTACTTTTCACTCTGCACAAGTGGACTCAtgaaaaagaatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243315 lncRNA upstream 33975 5079987 ~ 5081204 (+) True G205454
TU243310 lncRNA upstream 100663 5003626 ~ 5014516 (+) True gosr2
TU243292 lncRNA upstream 117383 4936564 ~ 4997796 (+) True G205436
TU243290 lncRNA upstream 159821 4894540 ~ 4955358 (+) False G205436
TU244073 lncRNA downstream 2478 5629458 ~ 5629659 (+) True G206157
TU244143 lncRNA downstream 108390 5735370 ~ 5735607 (+) True G206212
TU244156 lncRNA downstream 127872 5754852 ~ 5756939 (+) True G206221
XR_004579445.1 lncRNA downstream 241882 5868862 ~ 5869806 (+) True LOC117599005
TU244231 lncRNA downstream 270405 5897385 ~ 5898200 (+) False tmem98
XM_026916179.2 mRNA upstream 11305 5096322 ~ 5103874 (+) True hrob
XM_026917205.2 mRNA upstream 23362 5089263 ~ 5091817 (+) True rps11
XM_026916708.2 mRNA upstream 36809 5057922 ~ 5078370 (+) False map3k14a
XM_026916709.2 mRNA upstream 36809 5065369 ~ 5078370 (+) True map3k14a
XM_026916876.2 mRNA upstream 104142 5003548 ~ 5011037 (+) False gosr2
XM_026917073.2 mRNA downstream 161741 5788721 ~ 5824200 (+) True kcnj19a
XM_026916323.2 mRNA downstream 262572 5889552 ~ 5897559 (+) True tmem98
XM_026916324.2 mRNA downstream 262603 5889583 ~ 5897559 (+) False tmem98
XM_026917100.2 mRNA downstream 397316 6024296 ~ 6025839 (+) True LOC113528511
XM_026916485.2 mRNA downstream 492513 6119493 ~ 6128811 (+) True zgc:100868
XR_003402965.1 other upstream 23847 5091248 ~ 5091332 (+) True LOC113528649
XR_003402966.1 other upstream 24263 5090832 ~ 5090916 (+) True LOC113528650
XR_003402964.1 other upstream 24575 5090520 ~ 5090604 (+) True LOC113528648
XR_003402967.1 other upstream 24896 5090198 ~ 5090283 (+) True LOC113528651
XR_003402913.2 other upstream 393711 4712873 ~ 4721468 (+) True psmc3ip
TU244082 other downstream 30632 5657612 ~ 5660848 (+) True G206166
TU244359 other downstream 503803 6130783 ~ 6134571 (+) True si:ch211-198p11.6
TU244360 other downstream 503803 6130783 ~ 6134571 (+) False si:ch211-198p11.6
XR_004579365.1 other downstream 533354 6160334 ~ 6175366 (+) False mapk3
TU244376 other downstream 563185 6190165 ~ 6194964 (+) True ypel3

Expression Profile