RNA id: XM_026916899.2


Basic Information

Item Value
RNA id XM_026916899.2
length 1833
RNA type mRNA
GC content 0.47
exon number 11
gene id pitpnbl
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8973287 ~ 8983377 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCtcgaagccccgcccactttccTGATGACACACGCCAACGCGCCTGTCCAATTTCCGCCGACTGAGAGCTTCTTGTTGGATGTCCGGTTCTGTGCGGCTTCGGCATGGTACTCGTCAAAGAATATCAAGTGGTGTTGCCATGCTCAGTAGAAGAGTACCAGGTTGGCCAGCTGTACTCGGTTGCGGAGGCAAGTAAGAACAACACAGGTGGGGGCGAAGGGATTGAAGTCCTCCGAAATGAACCGTACGAGAAGGAAGGGGAGAAGGGCCAGTACACCCACAAAATCTACCACATACACAGCAAGGTGCCCACCTTCATTCAGATGGTTGCCCCAGAGGGAGCGCTGGTGTTTCACGAGAAAGCCTGGAACGCCTATCCTTACTGCCGCACCATCGTTACAaacgAGTACATGAAAGATGACTTTTTCATTAAGATCGAGACCTGGCACAAACCTGACTTGGGAACAACTGATAATCCTCATGGTCTTCCCACTGAAGAGTGGGAGGAGACTGAAGTAGTGCCGATCGATATCGCCGATCGCTCTCAGGTGGATGATTCGGACTACAAGCCAGAGGAGGATCCTGCTCTCTTTCACTCCGAGAAGACTGGCAGGGGGCCACTGGGACCAGGATGgaagAAGGAGCTTCATAACAGTAACTGTCCCTATATGACTGCGTACAAGTTGGTGACTGTGCATTTTCGCTGGTGGGGTCTGCAGGGCCGTGTGGAGAACTTCATTCACAAGCAGGAGAAGAGGCTCTTTACTAATTTTCACAGGCAGCTGTTCTGCTGGCTGGACCGCTGGGTGGACCTGACCATGGACGACATCCGCAGGATGGAGGAGGAGACGCAGCGGGAACTGGACCAGATGCGTAACCAGGGATCGGTGAGAGGAATGAAAGCAGGAGATGACTAGAGTAAGACCGGGCGAGGAATGGAAAGAAACCCAGGGCTACTTTTAATTTTACCTCCTTCAGTCCTCACATGGCCGATCACAATGTGCCACTTCACCAAGCCCTTTTGAACAGGAAACTGTCATCTTTTACCCAGGAAGTGTCCGTTATCTTGtgcgagagagtgtgtgtgcgcgtgcgtgcgtgcacgcacatgtgtgtaaaatgtgcgTGTGCATTTGTGCCGGTGCGGTTTGCCTTACATGACCTCATCATTTGCTGCCAAATTCTTTTGGATTTTACttcaaatgtgttaaataatgtcagcatttctttttataattaAGTATTATAACTGTTCTACGGTTTTTGGCTTATTTTGCAACCATCAGCTTTGTACTGAGCGTGCCAGTGGGGTCCTAAGGGCCAATCAAGTTTTACAAGGACGGTTTGGGGGTGCATTTCACTAAACTTGTATTtcaaacatgaataaacaaCTAAGTAATTTACTTCTTATTACAATTAAATTTGAGTCTGTCTGTGAACTTTTCAATGGGAAGTTAATGTACACTACAAGAAAAGGGCATGTGTAATAAACCAGTACACAAGTCATTGAAACAAAATGTATGCATAATGCTTGTTTTCCTCATATGAAACTCAAAGCACGATGGACAGAGCTTCTGTTaggttttctcttttttttcgtTGGATTCCTCTCTGCACTGAAGGCGTGACTCAGTGTGAGCGTCCTCGTTGCTGGGTGAGAGGAGCTGTTTGTAGATGAGACTCTTTTTAACCTCAAGAAGCGTTCCCACTTTTGACTGACATCTGGCATGCCAAGCCTCGCCACTTGGCTGAGGCAAACCCCATCTTTTGGAGCTGAGTCTGATTTACAATAAtgtaacaacaaaataaaaccaacatCATTGACTGTCA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015914 phospholipid transport biological_process
GO:0015695 organic cation transport biological_process
GO:0015697 quaternary ammonium group transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0008525 phosphatidylcholine transporter activity molecular_function
GO:0008526 phosphatidylinositol transfer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246439 lncRNA downstream 15076 8957261 ~ 8958211 (-) True G208099
TU246438 lncRNA downstream 16890 8955866 ~ 8956397 (-) True G208098
TU246437 lncRNA downstream 17632 8955442 ~ 8955655 (-) True G208097
TU246391 lncRNA downstream 58728 8871976 ~ 8914559 (-) True G208063
TU246390 lncRNA downstream 99785 8860563 ~ 8873502 (-) True G208062
TU246517 lncRNA upstream 23623 9007000 ~ 9007259 (-) True G208145
TU246529 lncRNA upstream 41384 9024761 ~ 9024983 (-) True G208151
TU246531 lncRNA upstream 47148 9030525 ~ 9030978 (-) True G208153
TU246536 lncRNA upstream 78203 9061580 ~ 9063507 (-) True G208158
TU246570 lncRNA upstream 119534 9102911 ~ 9103126 (-) True G208189
XM_026916735.2 mRNA downstream 19968 8937563 ~ 8953319 (-) False sez6l2
XM_026916736.2 mRNA downstream 20530 8937563 ~ 8952757 (-) False sez6l2
XM_026916734.2 mRNA downstream 20530 8937563 ~ 8952757 (-) True sez6l2
XM_034310141.1 mRNA downstream 21527 8937563 ~ 8951760 (-) False sez6l2
XM_026917257.2 mRNA downstream 36747 8929611 ~ 8936540 (-) True kctd13
XM_026916526.2 mRNA upstream 39169 9022546 ~ 9032032 (-) True lat
XM_026916527.2 mRNA upstream 39169 9022546 ~ 9032027 (-) False lat
XM_026916525.2 mRNA upstream 49467 9032844 ~ 9044136 (-) False spns1
XM_026916523.2 mRNA upstream 49467 9032844 ~ 9044136 (-) True spns1
XM_026917054.2 mRNA upstream 62268 9045645 ~ 9049091 (-) False nfatc2ip
TU246334 other downstream 259969 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 688695 8284474 ~ 8284592 (-) True LOC113528661
XR_003402917.2 other downstream 705649 8249885 ~ 8267638 (-) False slc4a1a
TU245462 other downstream 1542215 7425730 ~ 7431072 (-) False natd1
trnav-cac_10 other upstream 204143 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 213119 9196496 ~ 9203640 (-) False dnal4a
TU246678 other upstream 213119 9196496 ~ 9203640 (-) True dnal4a
TU246802 other upstream 426427 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 426427 9409804 ~ 9419584 (-) False prr15la

Expression Profile