RNA id: XM_026916903.2


Basic Information

Item Value
RNA id XM_026916903.2
length 2173
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC113528384
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10215045 ~ 10222874 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGCGCAGAAGAGCACCGACACTGCGAGTCACTCCCACGAACAACTATGCGGAAGTGCTCTGAAAGTGCTCTGAAAGTGCTCAGTATCGTATTTTGACCATTGTTTCGCGCATGATTATGGTTTGAGGAGCTGGGTTGCGGTGTGAAGTTTATCGTCCCATGCTCCATCCACTTTAAACAGCTATCATTAAGAGTAGAGAAGCAGACATGGCTTCCAATGGCGCCTCTGCGGACGGGCTTCTGTCCTATGAAACACTTGTGCACGCTGTAGCCGGTGCAATGGGCAGTGTGACAGCAATGACGGTGTTCTTCCCTCTGGACACAGCCAGAGTTCGACTGCAGGTGGACGAGAGCCGAAAGTCCAAAGCCACTCCTGCCATTCTGGCTGAGATTGCAAAAGAGGAGGGCGTAATGTCTCTATACCGTGGTTGGTTTCCTGTAATCTCCAGTCTGTGCTGTTCCAACTTCGTCTACTTCTACACATTCAACTCACTGAAGCGGCTGATGGTCCTGGAAGAAGGGCAGTCCAGGCCTGGCAGAGACCTTATCATGGGCTTCATCGCAGGGACTGTGAATGTGCTCCTGACTACACCCATGTGGGTGGTGAACACTCGGCTGAAGCTCCAGGGAGCAAAATTTCGGAATGAAGATCTCCACCAGACCCACTACAAGGGCATTTTTGACACTTTCTCTCAGATCATAGCTGATGAGGGGGTAGGAGCGCTGTGGAACGGCACGCTCCCGTCCCTGCTGCTGGTGTTCAACCCTGCAGTGCAGTTCATGTTCTATGAGGCCATGAAGAGGAGGGCAGGGCAAGGTGGACGGAAGATTTCATCACTTGAGATCTTTGTCATCGGTGCCATCGCCAAGGCTATTGCAACCACGGCCACTTATCCACTGCAGACCATCCAGGCCATTCTGAGGTTTGGCCAACACAAATCACAAGCGAAAGGAGGTGTACTGGGCAGCATGCGCAATGTGGTGAATTTACTAATGGACAGAATCAAGCGCAGTGGAGTTCTCGGCCTGTACAAAGGTCTGGAGGCGAAGCTTCTTCAGACGGTGCTGACAGCAGCTCTCATGTTCATGGTTTATGAGAAGATCACTGCAGTCACCTTCAAACTGATGGGCAGCAATAAGAAGCTGAAGCATTAACAACAGTTAAAACTAACCAGTGTCAGCCTGCTTCCTTTACTACCTCTCTAAACTCTATGGCAGATCTTAACCATCATCCCTTTTAGTGTAGGGGCTCAATAATTACAAAGATCAACTCAAATGCCTTTTAATTTTGATACTTTGTCTCTAAAAAATGTTCTGGTCACATTCACTGTCAGATTTTAGAAATGATGTAAAAAGCCTATTtggagagagttttttttttaattagaattcTTAATTCTGTACAGGAAACACTGTATGATGTACAGTACAATGTACAGAAACTTTAATTTATCTTGCTATAATTGCAAAGAAATGtcttactttatttaattttttaatcagtcAGCTATGAATTTCTTCTTTACAGCAATTCTTTCTTTCAAACACACGATGGCCTGTTTTGCTAGCTGTATGTGGAAAACATCATGACTGTGCATTACTGTAGTTAGTGAGTCAGTTTAGTGAGTCACGTGTCCGTGAGCATTCAGTTCGCACTCAAATGTGAGAGGTTACATCTCTGTCCTGTGAGATGAACAGTTGTTATTAACCGCACTGATTAATGAATTGTAGGTGTTTACGTGCTTGAACATGTAAAACtattagtggttttttttttttttttttgcaagagaACAAAATACTTTCAGCTACACATTTAGTCTTTTTGTCCATCAGCACATTAATGGggtaaaaggagaaaaaggCAGCTTATAAAGAATGCaaattattgttaaaaattTATGCCAAAACTATATGCAAATTTTAAACTAAAGTAATATGCCTATCCTTAAGGTAaattttattagaattatttagtACATAATCGGTCTAAGTGTACTTCATGAATTCCAGTGGTCAGTGTAACAGAATAAGAACTACCTCTGACTCTAGCTCTGATTATTTATGAACCTCTAACTtgtacaatgattttttttttaatcattaagaaACTAATATAAGCATGTTGTCTGTGCACAGAGATTAAAGATATTTGGTAATATTCAGCTGAAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13354 SLC25A17, PMP34; solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246973 lncRNA upstream 153080 10039409 ~ 10061965 (+) False G208488
TU246974 lncRNA upstream 153080 10039409 ~ 10061965 (+) True G208488
TU246978 lncRNA upstream 153080 10039409 ~ 10061965 (+) False G208488
TU246996 lncRNA upstream 331918 9864977 ~ 9883127 (+) True G208504
TU247001 lncRNA upstream 356163 9846084 ~ 9858882 (+) True G208507
TU247238 lncRNA downstream 2709 10225583 ~ 10226503 (+) True G208701
TU247342 lncRNA downstream 119034 10341908 ~ 10342224 (+) True G208783
TU247330 lncRNA downstream 149541 10372415 ~ 10417881 (+) False G208781
TU247335 lncRNA downstream 149541 10372415 ~ 10781459 (+) False G208781
TU247337 lncRNA downstream 190110 10412984 ~ 10417881 (+) False G208781
XM_026916863.2 mRNA upstream 19839 10192804 ~ 10195206 (+) True LOC113528352
XM_026916700.2 mRNA upstream 227272 9944306 ~ 9987773 (+) True rapgefl1
XM_026916963.2 mRNA upstream 288842 9917962 ~ 9926203 (+) True casc3
XM_026917260.2 mRNA upstream 297944 9912768 ~ 9917101 (+) False msl1a
XM_026917258.1 mRNA upstream 297944 9912865 ~ 9917101 (+) True msl1a
XM_026916301.2 mRNA downstream 76013 10298887 ~ 10341715 (+) True helz
XM_026916197.2 mRNA downstream 203185 10426059 ~ 10448685 (+) True lmtk2
XM_026916198.2 mRNA downstream 203185 10426059 ~ 10448685 (+) False lmtk2
XM_026916762.2 mRNA downstream 252480 10475354 ~ 10484206 (+) True bri3
XM_026917195.2 mRNA downstream 525272 10748146 ~ 10798178 (+) True fam20ca
XR_003402918.2 other upstream 235091 9944306 ~ 9979954 (+) False rapgefl1
TU246534 other upstream 1151730 9061565 ~ 9063315 (+) False nupr1b
XR_003402909.1 other upstream 1312368 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 2206778 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 2361536 7853191 ~ 7853509 (+) True G207480
TU247340 other downstream 126528 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 149541 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 190110 10412984 ~ 10417881 (+) True G208781
XR_003402977.1 other downstream 1314173 11537047 ~ 11537165 (+) True LOC113528662
XR_004579334.1 other downstream 1344245 11567119 ~ 11577823 (+) False luc7l3

Expression Profile