RNA id: XM_026916905.2


Basic Information

Item Value
RNA id XM_026916905.2
length 1066
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC113528386
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14692193 ~ 14709079 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACGTTTCAACCTGTTacatttcagccaatcagaggagaCGTCGCTCTTGAAGTCCAAATTCAAAAGTGATAGCTGCTGCCGTTAGCTGACTATTTTGCTAGCCTGGTTTTCAACACTGTGACGGAACTTCTAAACTAACCTTCTTTGTTTTTCGAAACATGGAGCCAATGAaggaagatttaaaaatgtacttttacgAGAACAGAATCGCTACTTATTCAGGGTGGCCGTTTGATGAGGACTGCGCGTGCACGTCGGAAAATATGGCCAAAGCTGGTTTTATCCACACACCCACTGACAACAGTCCGGATGTGGCCCAGTGCTTCTTCTGCTATAAAGAGCTGGAGGGCTGGGAGCCTGAGGATGATCCTCTCAAGGAACACAAGTCTCACTCTCCAACTTGCAATTTCATTCTGCTGAAAAAGGCAGTGGAGGAGCTCACAGTGGAGGAGATTCTGAAGCTgcagaaagagaggcagaagtTCCACATTAAAATGGCCTGCAAACAAGTAATTGAGAAGTTTGAGGAAGCAGCAAAATCAAGAAGAGGCGACATTATCAAACTAGCCATGGAAGGCTAAATGGCGTTTGTCTTTTCCTTGTATGCTTGGAAAGGACGTGGTCCAAAGCTGCGCTACCATCCTTGTATATACTGAATGGCATTATTCTTTAACCTCTTTAATGCAGTTTTATATCAACTTCTCATGATCACACAGGTAGATTCATAGAACCTGGCTGATTTCCTTCTCTATATTCGTGATGTTGCATGGATAATACAGCTAGATGCTGTAACTGGAATTGAGCAATCCCTTAAATTCCCTTAAGTTTAAAAGTGTTGTCTATTAATAGTCTATACAACTCCATGTTGCATGTTTTCCAGGTCTGTAATGAATACTGCTACATGACTTGTCATATTGTTCTGTTGTACCAATTCTCCAAGATGTAATCTGATTTTTACGAGAGTGTCTTTCAAAAGTTTTACGATTGTCATATGGTAGCACTTCAGTACATTTGCACTActtatttgtttagttttttttctgtgattgcAGTATTGTTGTCAA

Function

GO: NA

KEGG:

id description
K08731 BIRC5; baculoviral IAP repeat-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250196 lncRNA downstream 70411 14619232 ~ 14621782 (-) False G211195
TU250195 lncRNA downstream 70411 14619774 ~ 14621782 (-) True G211195
TU250187 lncRNA downstream 97529 14588820 ~ 14594664 (-) True G211187
TU250024 lncRNA downstream 229784 14461792 ~ 14462409 (-) True G211054
TU249962 lncRNA downstream 362273 14329586 ~ 14329920 (-) True G211003
TU250303 lncRNA upstream 118156 14827235 ~ 14844312 (-) True G211269
TU250308 lncRNA upstream 138173 14847252 ~ 14847456 (-) True G211274
TU250394 lncRNA upstream 225590 14934669 ~ 14935121 (-) True G211346
TU250411 lncRNA upstream 269540 14978619 ~ 14983132 (-) True rac1b
TU250397 lncRNA upstream 291866 15000945 ~ 15001328 (-) True G211349
XM_026916985.2 mRNA downstream 2061 14678750 ~ 14690132 (-) True LOC113528445
XM_026917053.2 mRNA downstream 226902 14463405 ~ 14465291 (-) True LOC113528481
XM_034310045.1 mRNA downstream 240598 14447240 ~ 14451595 (-) True si:dkey-282h22.5
XM_034310046.1 mRNA downstream 240645 14447240 ~ 14451548 (-) False si:dkey-282h22.5
XM_026917155.2 mRNA downstream 259473 14414913 ~ 14432720 (-) True LOC113528545
XM_026917075.2 mRNA upstream 23824 14732903 ~ 14738583 (-) True fscn2a
XM_034309677.1 mRNA upstream 59528 14768607 ~ 14840369 (-) False LOC113528036
XM_034309678.1 mRNA upstream 59528 14768607 ~ 14840369 (-) False LOC113528036
XM_034309676.1 mRNA upstream 59528 14768607 ~ 14840369 (-) True LOC113528036
XM_026916276.2 mRNA upstream 59528 14768607 ~ 14808228 (-) False LOC113528036
XR_004579411.1 other downstream 2061 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 171218 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 201418 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 662552 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 685681 14004169 ~ 14006512 (-) False LOC113528401
XR_003402969.1 other upstream 762698 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 2583772 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 2583772 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 2583772 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 2583772 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile