RNA id: XM_026916906.2


Basic Information

Item Value
RNA id XM_026916906.2
length 2510
RNA type mRNA
GC content 0.47
exon number 2
gene id wfikkn2a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12526340 ~ 12530301 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAGTGGTGCCTGGGATTTGCTGTAATCTGCAGAGAGCCTTTCTAAATCCTGTGCTAGATCTTAAGCAACAGGGTTCATGCACCGCTACCTAACCTCAAAGGACTATTAAAGGTGGTGTTGTGCATCGCCTTCTCTCTCCACCTCGCTAACTGTGTGTACGGAGAGTCTCTACACGTTCGTGTTCACTCAGAGCAAACCTATATGTGACTATACATCGAGTGCTCTTCGTCGCTTATGTCCAGCAGCGTTAGTCTCTAAGAGTTTGGAAAGGTTTTGCTCAGCTGAACTGAACACTAGAAGATGTGGTGGATGTTGTTTCCCCGATGGATCTGGTTTTTCCTTGGGCACGTCTGCGTTTTGCGCGTGCATCTCCGGGTCCGGGCCATGACTGTGTCCAAGGTGGTGTATTCTCACGCCGGAATGTGTCCTAATGAGATGAACCCGAACCTCTGGGTGGACGCGATGAGTACCTGCATGCGCGAGTGCCAGTCAGATCAGGACTGTGAGACTTTTGAGAAGtgctgtttaaatgtgtgtggaAGCAAGAGCTGTGTGGCCGCCCGTTATAGGGACATGAAGGGAAATAAAGGACCAGTGGGAATGCCAAAAGAGGCCACATGTGACAAGTTCATGTGCACCCAGCAGGGTTCAGAGTGTGACATCTGGGATGGACAGCCTGTGTGCAAGTGCCGTGACCGCTGTGAGCGGGAGCCTCGTTTCACCTGTGCCTCAGACGGTATGACCTACTACAACAAGTGCTACATGGATGCAGAGGCCTGTTCCAAGGGTGTCACCCTTACTGAGGTCACTTGCCGGTTCCACCTGTTGTGGCCCAACACCAGCCCTCCTCCTGAGGAAACGACTATGCTTCCTACCACTGTTTACCTGGAAACTACCCCTGTGGATATCCAGGCTCCAATAGTGATCAGCAATCCAGGGCAAAACATTGTGTTTGTAGGTGAGACAGCAAGCTTCCTGTGTGAAGTAACTGGCAAACCCAAACCAGAGATCACATGGGAGAAACAAGTGGAGGGAAAAGAGAACACAGTCATGAGGTCAAACTACGTACAAGGTAACATAGTAGTGACTAACATTGCTCAACTTGTCATCTACAATGCCCAGCTCCAAGATGCTGGCATTTATACCTGCACCGCTAAAAACCTGGGTGGATCTACACAGACGCACTTCATGTTGTCTGTCATACGTCAGGATCAAGCCATGAATGAGAGCTTAGTGAATTCCACACGTCTTCCTGCTGAGGAGTGTCTGAAAGCACCTGATATGGGTGACTGTGGAGAGGAAACCATCAGCTGGTACTATGAAGCCAAGCGGAACAACTGCTTCACCTTCACCTATAGCCAGTGCAACAAGAACAGAAACCACTTTGACACGTACAAGTCATGCATGCTATCCTGTGGAGCAGAACTAGCTGCCCCTTGCTCCCTCCCTAGTGTCCAGGGACCCTGCAAATCTTATGAGCCACGGTGGGCATACAACCATCTCCTCAAGAAGTGCCAATCGTTTGTCTATGGTGGCTGTGGTGGCAATGAGAACAACTTTGAAAGTAAGGAGGCCTGTGAGGACATGTGCCCCTTCCCCAAGAACCACAACTGCAAGCTGTGCAAGCCAAAACAAAGGATGATTACCAGCTTCTGCAAGAGTGACTTTGTGATCTTGGGTCGCATTACAGAACTGACAGAAGACCAAGATTCAGGCCATGCACTCATCACAGTAGATGAGATCCTAAAGGATGAGAAGATGGGACTGAAGTTCTTTGGACAGGAACCCTTGGAAGTGACACTGCTCAACATAGACTGGAGTTGTCCGTGTCCCAACATCACTAATGCTGAGGGCCAGCTGATTATCATGGGGGAGGTGCACAATGGGATGGCGGTACTGCAGCCGGACAGCTTTGTGGGAGGCTCCAGCAGCCGTCGCATACGCAAGCTCCGCGAAGTCATCAACAAGAAGGCATGTGCTTTTCTCAAGGAGATTGGCAACACACAATAGTAATAAGCTCATACTGAAATGCAATGGACTCTCTGAGACACAATAAGTACCCGTTCCCACCAACCTTTTAGTAGGCATCACAGTGAGCCACCAGCATTATCATATTACATCAAGGCTTTCAGTTCCATTCCAGTGTTTGAATcatgcaaacaaaaaataaaacaacaattaaTTCTGCATTAATGCATACACGGTTATCTCCACGTAAAAATTATCATTGTTACTTATTTACTCTGAACATAACTGTTTTCAAGCacttattttgtaaaaattaaaaaaaaaaatcttttcatattttagtTGCACAAATTGTGTGTGCTCTTAAATCTGAACTCTAATGACAGAATGCCTTATAGGCAATTACTTAAGCTAAATCCCATGGCCTTTATCTTAGTCAATTATGAAAAGGGCTCAAATCTGCTGACTAacttcattcttcattcttcCTTCTATTTATCACCATGTTGGCTTGAATCAATAAATGGCCTGTCCAGTTTA

Function

GO: NA

KEGG:

id description
K23621 WFIKKN; WAP, Kazal, immunoglobulin, Kunitz and NTR domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579344.1 lncRNA downstream 62462 12446461 ~ 12463878 (-) True LOC117598772
TU248758 lncRNA downstream 192678 12333454 ~ 12333662 (-) True G209984
TU248756 lncRNA downstream 227363 12298124 ~ 12298977 (-) False LOC113528332
TU248726 lncRNA downstream 289148 12236974 ~ 12237192 (-) True G209961
TU248715 lncRNA downstream 351933 12173454 ~ 12174407 (-) True G209951
TU248929 lncRNA upstream 56130 12586431 ~ 12587089 (-) True G210123
TU249181 lncRNA upstream 337289 12867590 ~ 12868480 (-) True G210351
TU249178 lncRNA upstream 338951 12869252 ~ 12870186 (-) True G210349
TU249180 lncRNA upstream 391636 12921937 ~ 12923464 (-) True G210350
TU249177 lncRNA upstream 396344 12926645 ~ 12928808 (-) True G210348
XM_034310198.1 mRNA downstream 131762 12389706 ~ 12394578 (-) False LOC113528448
XM_034310199.1 mRNA downstream 131762 12389706 ~ 12394578 (-) False LOC113528448
XM_026916992.2 mRNA downstream 131762 12389706 ~ 12394578 (-) True LOC113528448
XM_026916993.2 mRNA downstream 132261 12389706 ~ 12394079 (-) False LOC113528448
XM_026916994.2 mRNA downstream 132580 12389706 ~ 12393760 (-) False LOC113528448
XM_026917235.2 mRNA upstream 7111 12537412 ~ 12543062 (-) True ankrd40
XM_026917033.2 mRNA upstream 16032 12546333 ~ 12559213 (-) False tom1
XM_026917031.2 mRNA upstream 16032 12546333 ~ 12559213 (-) False tom1
XM_034310226.1 mRNA upstream 16032 12546333 ~ 12559212 (-) False tom1
XM_026917032.2 mRNA upstream 16032 12546333 ~ 12559212 (-) False tom1
TU248759 other downstream 187071 12333858 ~ 12339269 (-) True msrb1a
TU248755 other downstream 210871 12300005 ~ 12315469 (-) False LOC113528332
XR_003402971.1 other downstream 500768 12025502 ~ 12025572 (-) True LOC113528656
XR_003402968.1 other downstream 770417 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 825239 11699906 ~ 11701101 (-) False zgc:162612
XR_004579428.1 other upstream 18528 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 18528 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other upstream 18529 12548830 ~ 12559213 (-) False tom1
XR_004579427.1 other upstream 18819 12549120 ~ 12559213 (-) False tom1
trnas-aga_12 other upstream 296157 12826458 ~ 12826539 (-) True trnas-aga_12

Expression Profile