RNA id: XM_026916918.2


Basic Information

Item Value
RNA id XM_026916918.2
length 1850
RNA type mRNA
GC content 0.41
exon number 6
gene id zgc:171844
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12562950 ~ 12583366 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtctctaacacacactcacattcatgCAAGCGAGTGTGATGCGCGTAATCACAGTGATAAGTTGATTTGAATGCCAGTGATCTGGGCACGCTGCAGGTCTGCAGAACGCTGCTGAAGTCGTGCTTTAGGCGGAAGCGCTCTGGCAGAATGCAGAAAGAGCGCAGATGTGGGAAGCTGTACGGCTCTGTGGAGCGAGTGGAGCTGGGAGAGGACGCGCACAGAACAGATGAAGACGGCATTGTGTCCATGGCGGATTCCACCATCACTGTGGATGACATTGAGGGCGAGCTGTTCAAAATCGAGAGGATACGAGATGTGCTGGTGCGGAGAGAGTCTGAGCTGAGATACATGATGGATGATATTCAGCTATGTAAAGAGATCACAAGGCTTAAAAAAGAACTGCAGAAATTGGTGTCGATCCCAGATAAAGACAAGTCGAGTGAAGACCGGCAGCGTGAGGAGGAGCTGTTGCAGCAGATCCATAAGCTGGTGGAGACTCGGGACTTTCTAGTGGATGATGTGGAGTTTGAGAGACTGAGGGAGCAAGAGGAGGACAAAGAGATGGCCGAATTCTTACGGGCAAAATTTCCTGCAAGCACTACCAAGAAAAGTTCCACTCAGAAGAGAAGAATGACCTCTAGGGCCCATGTCTCCTCTCCAAAAGTGACCAAGGCTGGCCTCACCCTGCTTAAAGAATGCTGTGGTTTTACCTGTTCTGTCATGTAGAATAAGAAATGATGAGAGTGTCTACAAGAGTGAAAGAAGAAGTGAGATTAAAAAGTCCAACAAAAGTACAGAAGGAGAAGAATATACGTGTAGGCAAGAGGCTTTTTACACAACAGTATATTTTATGAGGTACTGAGGACTAGTCTCATTATTGATGTGCAAATtgtggaaattattttttaaatcaacaatGGGATAAACATTATGCAATGTGATGCAAGTgaatttattgtaattatacagtagtgtgtgtctgtaaattTAAACCCGGTAATCAGTAGTTTAAATTAACAGTATTTTCCCTTATTGTCCGTccttgtgaaaataaaaaaaggcagCTGCCTGATTTGCATCAGCTACTAACTTCACTATATTATGTTTGTCAGTGCAAGCGTGGTGTCCTTGCGATGTTCTGCCACTGAATACAGCTCTATTTCAACTTAGATTGAACCACTGACATGTCCTTGtgcctgagaaagagagagagagagagagagagagagagagagagagtgagcctGAGAGAGGGGGAGTATGAGGATGAGTAACAAGAAAGAGATTACATTACAAACTAACCAAGTAGAATCAAAAGAATTGGATGCATGGACTATAACTGAGGAGATCTAAGCAGAATCAGGAATGGCAGTTAAAAGGGATTTGAATGTATTTGTGCGCTGTTATGTGCAATGTGACTGAAATTGAACTTGAATGCTTCAAAGTTTTTCTGATCTGAAGCATCACTATGCTAAAAACTGGAGGTCAGGTAACACGTGATGAAAAACTGATTAGTTGTTTATGATTCATTCTAATAGGCTGCACAATccatattttgaataaaatattctgtatagacataaaaaaaaaaacatgctgaattaaatatattaaacctCTGCTTTGTCAGCGGCTGTGTAGTTACACATATTTTCCAGGCTTTTTTAAGTGTACTGTTCTCTCTTTCAGCTGCAACATCTTTAACTGTGTTAATGTGAAGAGAGCAACTAGTGTTTGGTTTGTATCAAGAGAAGATTTGCCTGACTTTACCTCAGCAGTTTGTAAAGTTTGATGTTTTTGGTGGTCatgtttcacaaaataaaatttttcattaaagaaaatgaacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579344.1 lncRNA downstream 99072 12446461 ~ 12463878 (-) True LOC117598772
TU248758 lncRNA downstream 229288 12333454 ~ 12333662 (-) True G209984
TU248756 lncRNA downstream 263973 12298124 ~ 12298977 (-) False LOC113528332
TU248726 lncRNA downstream 325758 12236974 ~ 12237192 (-) True G209961
TU248715 lncRNA downstream 388543 12173454 ~ 12174407 (-) True G209951
TU248929 lncRNA upstream 3065 12586431 ~ 12587089 (-) True G210123
TU249181 lncRNA upstream 284224 12867590 ~ 12868480 (-) True G210351
TU249178 lncRNA upstream 285886 12869252 ~ 12870186 (-) True G210349
TU249180 lncRNA upstream 338571 12921937 ~ 12923464 (-) True G210350
TU249177 lncRNA upstream 343279 12926645 ~ 12928808 (-) True G210348
XM_026917033.2 mRNA downstream 3737 12546333 ~ 12559213 (-) False tom1
XM_026917031.2 mRNA downstream 3737 12546333 ~ 12559213 (-) False tom1
XM_034310226.1 mRNA downstream 3738 12546333 ~ 12559212 (-) False tom1
XM_026917032.2 mRNA downstream 3738 12546333 ~ 12559212 (-) False tom1
XM_026917030.2 mRNA downstream 3738 12546333 ~ 12559212 (-) True tom1
XM_026916093.2 mRNA upstream 4309 12587675 ~ 12591505 (-) True mfsd6l
XM_034309783.1 mRNA upstream 10211 12593577 ~ 12612926 (-) False pik3r6b
XM_034309784.1 mRNA upstream 10211 12593577 ~ 12609754 (-) False pik3r6b
XM_026916230.2 mRNA upstream 10211 12593577 ~ 12609754 (-) False pik3r6b
XM_026916229.2 mRNA upstream 10211 12593577 ~ 12609753 (-) True pik3r6b
XR_004579428.1 other downstream 3737 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other downstream 3737 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other downstream 3737 12548830 ~ 12559213 (-) False tom1
XR_004579427.1 other downstream 3737 12549120 ~ 12559213 (-) False tom1
TU248759 other downstream 223681 12333858 ~ 12339269 (-) True msrb1a
trnas-aga_12 other upstream 243092 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579330.1 other upstream 812100 13395466 ~ 13399225 (-) True LOC117598755
XR_003402937.2 other upstream 1420803 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 1436882 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 1904455 14487821 ~ 14490775 (-) True LOC117599009

Expression Profile