RNA id: XR_003402937.2


Basic Information

Item Value
RNA id XR_003402937.2
length 1787
RNA type misc_RNA
GC content 0.44
exon number 4
gene id LOC113528401
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14004169 ~ 14006512 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGGGCTCTATCTTAGCCTGTACAGTCAGAGGAGAACCCAAAATGAGAAAGCACAAGACACAAGCACAAGTATATTAAGGAGGAAAGAGAAAGTTGAGTGACAGATGCAAAACCTCTGGTTTGGAAAGTAAAGCATTTAAGAAGCATTGTTATTTTATGGTGTTGGAAGTCtactgaagaagaagaggatAAGGTGATTAAGAAGGACTGTGAAGTATTTCTGCTACTGTCCTGGAAGTCCACTGAAGAGAATAACACAGAAAGGAGGCCTTTGACATTGAGGATCTTGCctgtattgtgtttttttgtccacATTTCTCCTGCACCTCCTCCTAAGCTCGGAGCAGCGGGGGAGGCCAAAGCGTAGTTATAGCAGTAATGAAGTACAGCTACCAGAACCTTGTGTCTCAGTACACACGTCAGAGCACATATACCCCAACACACTACACCTCTACCCATTACACTCCGAAGCAGTATTCCACGAGCTCCTATTCCACAAGCCACTACAGCTCAGCAAAGTACACGCCAACCTACTACAGTCCACCTGTTTACACCCCGGCTTACAAGAGCACTTCCTCCTCCTACAAGTCTGGCTACAGCAAGCCCTCGCGACAAGTCAGCAAACATGGTACACCTGTACAGCAGACTCCCGCTGCAACAGGCAAGCCTAATCGGACTGTCCGCTTCACCAATGATGTCATCTTCCAGGACTATGTGCGGCAAGGAGATCTGGAAATGATTGGCCGCTTTATGAGAGCGAGGAAAGTGCGAGTGGATACGATCTTCCATTCTGGCATGGCAGCTCTCCATGAGGCTGTACTCTCAGGGAACTTGGAGTGTGTGAAGCTTCTGATAAAATATGGAGCTGATGTTCATCAAAGAGATGAGGATGGCTGGACACCTCTGCACATGGCCTGCAGCGATGGCTACCCCGAGATTGCACGGTATCTGCTTTCACTAGGTGCTAGTACAGAAGCTGAGAATGCAAATGGGGAGAAGCCAGCAGATCTTATTGACTCTGACTGCAAAGAGCTGGTCAAACTGTTTGAAGTGGGTTGTGTCTAAGGGCCAGCATAAGGAACCCAAAAGAACTGCAAGAAAACAGTTCCTCTGGATTCAAGTCTGTCTAAGAGGATGGAGCTATCAAAGTAGCTTCtggttattatatttttattaagagAACAGAGATTGGAACAAGGAcattcagatattttttttttttttttttttgcaaggcgATATAGGAATATACTTTGCTGCACACATACTATCGCCTCGGAATGCCTGAATACAGTGCGACCTTCACTGGAGCTCGGATTACATCGCACCCTGACGCCCAACTCAGCCGTATCATTTCATTAATGCGAGTACGTCATCCAGTGCCTGCCTTAAATTTAGATCAGGACAACGCTCATATACAGTCACACGAGGAATTGCTGTTCACAGATCTGTGCATAATGTCTAAAATGTAGCTAAGATCACAATTCTGTCAGTGCTATAAGTGCTTAACCTGGCTTAACACTaggtatactgtatgtactggcATGTGTTTGACCTGTACACTGTTTAGGACAGCAGAGTATCTCTTGTCTGCAGGGCAGCTTGAGACAACACTGAAAACATGTACGTTTTAATGATGGAATTTGTATATGAGCAAAATACTATCCTTTCTGTACTGCTAAAAGTGAGTGCACTATTTCTACAGACTTGTAGAATTTCTCATGTAAAGTcttatgtttttctcttttttactgttttcataaataaagGTGCTTTTTAACGctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249888 lncRNA downstream 3161 13993996 ~ 14001008 (-) False mcrip1
TU249866 lncRNA downstream 134596 13869199 ~ 13869573 (-) True G210915
TU249850 lncRNA downstream 159693 13843036 ~ 13844476 (-) False xylt2
TU249820 lncRNA downstream 179876 13758526 ~ 13824293 (-) True G210877
TU249837 lncRNA downstream 217658 13732419 ~ 13786511 (-) True G210888
TU249911 lncRNA upstream 128582 14135094 ~ 14135304 (-) True G210952
TU249932 lncRNA upstream 210161 14216673 ~ 14216872 (-) True G210973
TU249956 lncRNA upstream 287795 14294307 ~ 14298198 (-) True G210997
TU249962 lncRNA upstream 323074 14329586 ~ 14329920 (-) True G211003
TU250024 lncRNA upstream 455280 14461792 ~ 14462409 (-) True G211054
XM_034310273.1 mRNA downstream 3132 13993876 ~ 14001037 (-) False mcrip1
XM_026915988.2 mRNA downstream 3135 13993876 ~ 14001034 (-) True mcrip1
XM_026916983.2 mRNA downstream 14277 13986722 ~ 13989892 (-) True alyref
XM_026916984.2 mRNA downstream 14279 13986722 ~ 13989890 (-) False alyref
XM_026916721.2 mRNA downstream 19146 13960501 ~ 13985023 (-) True arhgdia
XM_026917110.2 mRNA upstream 11103 14017615 ~ 14029641 (-) False pecam1
XM_026917109.2 mRNA upstream 11103 14017615 ~ 14029641 (-) True pecam1
XM_026917236.2 mRNA upstream 177025 14183537 ~ 14202558 (-) True LOC113528592
XM_034310166.1 mRNA upstream 372523 14379035 ~ 14391094 (-) True prpsap1
XM_034310167.1 mRNA upstream 372523 14379035 ~ 14391089 (-) False prpsap1
XR_004579330.1 other downstream 604944 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 1177630 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579428.1 other downstream 1444956 12548829 ~ 12559213 (-) False tom1
XR_003402952.2 other upstream 13736 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 481309 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 513765 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 672238 14678750 ~ 14690132 (-) False LOC113528445
XR_003402969.1 other upstream 1465265 15471777 ~ 15471912 (-) True LOC113528654

Expression Profile