RNA id: XM_026916948.2



Basic Information


Item Value
RNA id XM_026916948.2
length 1424
RNA type mRNA
GC content 0.40
exon number 6
gene id tmem107
representative True

Chromosome Information


Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20419758 ~ 20424672 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CAGGGGGAGATAGTGATCACATTAACCACATGAACCGAGGAAAGTAGCGTTGCTGTAGTAACGGGTAGGAGAGACGCTTTCGGCTAATTCTCTTGTTAAATACTCCGTTTAAATATGACTGTGTGAAGGAAATTTAAAAAGCTGCATGTGTGATATGGAGTGCTGACTGTGGCTACATGAATAACTGAAGACTAACCGTTATTCACCACTACTGCAGTCTAACCTGAATGACCCTTTTGGCTTTGACATGTCAGTGATAAACAGCCTCGTCCCAGCTCGGTTTCTCGTCATCACCGCTCACCTTGTGATGGTCATCACCATCTTCTGGTCTCGgGGAAACAATGTTAAATCATGTTTACCACTGGACTTCACAGAGGAGCAGTACACGACTGAGGACAAccggttgatTATTGCTCTATCAGTAACTCTGTGTCTATTTGCCATTGAATTGTTTGGATTCTTCTCCGGTGTCTCGATGTTCAACAGTAACCAAGGAGTGCTGTCTATGGCGTGTCACTGCAGCGCatccgtctctctgtctttcttcgTCTTTCAGCAGTGGGAATGCTGGGTTTACTGGATAGTCTTCGCATTCTGCAGTGTCATTCCTGCCCTGTGTGAGCTGGTACTGATCATCGCTGTGTTCGGACTGAAGAAGAAGCCGATGTGAAGGTTTAAATCCGTGTGCCTAGTATGACGTCCACATTAGTAGCACAGATCTACTGTATCTGTAACTTTATAATGAGCTATGCAACATCAGCATTGGTGGATATTCCAGTGTTCTAAGATCTGTATTGTATAAAACTGTATAGTGCTGAAGATTTTACCCCAAATCATGTATATTGCTACAAATGACTTACctcggaagtgggaagtcggaGCTCCCAATGACATCATTTTCGACCTCCGTGCTATTGAGGTacaaagtgtatatatatatatgtacatattttgttagcaacaagctagccagctaactgtgctgagtgatgtatattttccttttcAAAACAGCACATATAGTCAATGATATACTGTCGATTTAACAAGTAAATATATGTCTGTTGATTGATCTAAggcaaatactgtatatacatgtatacagcATAATTCATTTAATAGCAAAATGAGCCATGCTTATTTGACGTCACCCCCTGAACTCGGAGGAACTCATAGTTGAGAAGATTACCCCGAGTTCACGGGTAGGAATTTcaactatgattttttttttttttaaaacaaggaaTTAAAGTATTTTTCACCATTGTATCCAATGTTCTTGTACATTATAGAAAGAAGCTTGCAAAAgagtattttatatttcaaattGCTTAGAGTATTTCTAGATGCTCAATAAAGATGACCATGCACCACAAGGACCCTGCGcatatgataaaaatatttgtaaatagcaatacaatgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU253634 lncRNA downstream 212617 20205794 ~ 20207145 (-) False hs3st1
TU253590 lncRNA downstream 363618 20020552 ~ 20056144 (-) True G214159
TU253468 lncRNA downstream 435613 19940354 ~ 19984149 (-) False lyar
TU253270 lncRNA downstream 756000 19663337 ~ 19663762 (-) True G213879
TU253100 lncRNA downstream 997347 19417184 ~ 19422415 (-) True G213716
TU253789 lncRNA upstream 11380 20436052 ~ 20438834 (-) True G214325
TU253795 lncRNA upstream 20851 20445523 ~ 20445748 (-) True G214331
TU253976 lncRNA upstream 354093 20778765 ~ 20781702 (-) True G214493
TU254012 lncRNA upstream 416759 20841431 ~ 20841634 (-) True G214526
TU254118 lncRNA upstream 475413 20900085 ~ 20904041 (-) False spry1
XM_026916159.2 mRNA downstream 1381 20414100 ~ 20418381 (-) True aurkb
XM_034309810.1 mRNA downstream 7634 20400480 ~ 20412128 (-) True bod1l1
XM_034310025.1 mRNA downstream 19287 20394684 ~ 20400475 (-) True LOC117598840
XM_026916964.2 mRNA downstream 33137 20383757 ~ 20386625 (-) True nkx3-2
XM_026916170.2 mRNA downstream 45186 20344023 ~ 20374576 (-) False rab28
XM_026916811.2 mRNA upstream 2087 20426759 ~ 20430515 (-) True LOC113528321
XM_026917292.2 mRNA upstream 182952 20607624 ~ 20697160 (-) True LOC113528637
XM_026916521.2 mRNA upstream 475385 20900057 ~ 20905271 (-) True spry1
XM_034309906.1 mRNA upstream 479852 20904524 ~ 21003470 (-) False spata5
XM_034309907.1 mRNA upstream 484283 20908955 ~ 21003477 (-) True spata5
trnal-aag_9 other downstream 6832 20412849 ~ 20412930 (-) True trnal-aag_9
TU253598 other downstream 356272 20040423 ~ 20063490 (-) False slc2a9l2
TU253095 other downstream 971428 19444989 ~ 19448334 (-) False rbbp6
trnat-cgu_6 other downstream 1343422 19076269 ~ 19076340 (-) True trnat-cgu_6
TU252457 other downstream 2042399 18376077 ~ 18377363 (-) False LOC117598999
TU254170 other upstream 589767 21014439 ~ 21027259 (-) True fgf2
LOC113546932 other upstream 1247490 21672162 ~ 21683433 (-) True LOC113546932
LOC117598919 other upstream 1248150 21672822 ~ 21673330 (-) True LOC117598919
LOC117598868 other upstream 1250966 21675638 ~ 21676807 (-) True LOC117598868
TU254923 other upstream 1251599 21676271 ~ 22215359 (-) False G215187

Expression Profile