RNA id: XM_026916950.2


Basic Information

Item Value
RNA id XM_026916950.2
length 3496
RNA type mRNA
GC content 0.50
exon number 28
gene id eftud2
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7084441 ~ 7102215 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttaatcaggCAGAGCGAAAGGCGCCTTGTCTGTGACGTCATCGACGTCCGACTTACGTTGTGCGGTGTGAGGACCTGGCGGTGTATGGTGTTTGGAAACACTTTGCACAAATACGATAAACCCGTAAATACGGTGCCAGAATTGTTTGTTGAAACCACGCCTGATAAGAGCTCAGCACCATGGAGACAGATCTGTACGACGAATTCGGTAACTACATCGGGCCCGAACTGGACTCTGATGAGGATGAAGACGTAGAGGCGGAGGACAGAGATGCGGTTGAGgcggatgaggatgaggaggatgaagacCAGGTTGATGGTGATGAGGATGGTGGCGGCATGGAGGTCGTTCTGCATGAGGATAAGAAGTATTATCCGACTGCAGAGGAAGTCTATGGGCCCGAAGTGGAGACCATCGTCCAAGAAGAGGACACACAACCACTTACTGAGCCTATTATAAAGCCTGTGAAGACGAAGCAGTTCACTCTTACAGAGCAAGAGCTTCCAGCTACAGTTTATGACATGGAATTTCTCGCGGATTTAATGGACAGCTCCGAGCTGATTAGAAACGTCACTCTGTGCGGTCATTTACACCACGGCAAGACATGCTTTGTGGACTGCCTGATTGAACAGACTCATCCAGAAATCCGTAAGAGAGATGATGCAGATCTGCGCTATACAGATATTCTTTTCACCGAACAAGAGagAGGAGTTGGTATTAAGAGCACACCTGTGACAATGGTACTTCCTGACTCAAGAGGGAAATCCTACCTGTTCAATATTATGGACACTCCAGGTCATGTGAACTTCTCTGATGAGGTTACAGCAGGAATCAGGCTTTCAGATGGGATTGTGCTGTTCATCGATGCTGCCGAGGGGGTGATGCTGAACACGGAGCGTCTGATAAAACATGCCGTACAGGAGCGGCTGGCCATAACCATCTGCATCAACAAAATAGACCGGCTGATCTTGGAGCTCAAACTTCCTCCCACTGACGCCTACTACAAACTGCGCCATATCGTCGACGAGGTCAATGGCATGCTCAGCACATATACAACTGATGAGTCTCTAGTGGTGTCTCCTCTGCTGGGCAACGTGTGTTTCGCTTCCTCACAGTACAGCATCTGCTTTACACTCGGGTCTTTCGCCAAGATCTACTCAGATACCTatggtGACATAAACTACAACGAGTTTGCAAAGAGACTCTGGGGAGACATCTACTTCAACCCCAAGACGAGGAAGTTCACTAAAAAAGCCCCCAACAGTAACTCACAGCGCAGCTTTGTCGAGTTCGTCCTGGAGCCGCTCTACAAGATCCTCTCACAGGTGGTCGGGGATGTGGACACGTCACTGCCACGTGTCCTGGATGAATTAGGGATCCACCTGACCAAAGAGGAGCTCAAACTCAACATCCGGCCTCTGCTGCGACTCGTCTGCAACCGCTTCTTTGGGGAGTTCACAGGTTTTGTGGACATGTGCGTGCAGCACATCCCGTCTCCTCAAGGGGGCGCCAGAGCCAAGATCGAGCACAGCTACACCGGAGGACTGGACTCAGACCTCGGGGAGGCCATGACTGAGTGTGACCCTGATGGTCCGTTAATGTGTCACACCACTAAGATGTACAGCACAGATGACGGAGTGCAGTTCCACGCCTTTGGCAGGGTTCTGAGCGGAACGCTGCAGGCAGGGCAGCCGGTGAAAGTACTAGGAGAGAATTACACACTGGAGGACGAAGAGGACTCGCAGATCTGCACTGTCGGACGCCTCTGGATCTCTGTAGCAAGgtatCAGATTGAGGTGAATCGGGTCCCCGCTGGCAATTGGGTGCTAATTGAAGGCTGTGACCAACCCATTGTGAAAACAGCCACCATCACAGAGCCTCGGGGCAATGAAGAGgCTCAGATCTTCAGGCCTCTGAAATTCAACACTGCTTCCATCATCAAAATTGCAGTGGAGCCTGTGAATCCTTCTGAGCTGCCCAAGATGTTGGATGGACTGAGAAAAGTTAACAAGAGCTACCCATCCCTTACAACAAAGgtggaggAGTCTGGAGAGCACGTTATCCTGGGTACAGGTGAGCTCTACCTGGACTGCGTCATGCACGACCTGAGAAAGATGTACTCAGAGATCGACATCAAGGTAGCTGACCCTGTAGTGACGTTTTGCGAGACAGTGGTGGAAACATCCTCTCTCAAGTGCTTTGCTGAAACACCcaataaaaaGAACAAGATCACGATGATTGCTGAGCCTCTGGAGAAAGGCCTTGCTGAAGACATTGAGAACGAGGTGGTGCAGATTACATGGAACAGaAAGAAGTTGGGAGAGTTCTTCCAGACCAAGTATGACTGGGATTTGCTGGCAGCTCGATCTATCTGGGCTTTTGGACCCGACACCACTGGACCCAACATCTTAGTAGACGACACACTGCCCTCTGAGgTGGACAAAGCTCTCCTTGGCTCAGTGAAGGACAGCATCGTTCAGGGCTTCCAGTGGGGAACTAGAGAAGGTCCTCTATGTGATGAACCCATTCGTAATGTGAAGTTTAAGATTCTGGATGCAGTCATAGCTCAGGAGCCGTTACACAGAGGAGGCGGGCAGGTCATTCCTACCGCAAGAAGAGTCGTGTATTCCGCCTTCCTCATGGCTACACCCAGGCTGATGGAGCCCTATTACTTTGTGGAGGTTCAAGCTCCTGCTGATTGTGTATCTGCTGTTTACACTGTACTGGCACGCAGGAGAGGTCATGTGACACAGGATGCACCAATCCCCGGGTCGCCTCTATACACCATTAAGGCTTTCATTCCTGCAATCGACTCATTTGGGTTTGAGACTGAtctgcgtacacacacacagggacaggCCTTCGCACTCAGTGTGTTCCACCACTGGcagATTGTTCCTGGTGATCCTCTGGACAAGAGCATCGTGATTCGGCCGTTAGAGCCTCAACCCGCCCCTCATCTAGCCAGAGAGTTCATGGTCAAGACTCGTAGACGCAAGGGTTTGAGCGAGGACGTCAGTATCAGCAAGTTCTTCGACGATCCTATGTTGTTGGAGCTGGCCAAGCAGGATGTGGTGTTGAACTACCCCATGTGATAGAAAAGAACAAGTTCAGTTACTGGCCTCACTTTTCATCCAACTGCATCATACCAGTATCAATCCCCCAATCACCTGGCAGTGAGACTCGCCACAGATACTGTTTCCCCAATACTCACTTCCCCAATGCCAGCATTAGGAGATGTTCTATTGTGGCACGgaaattcctgtttttttcttagCTTAGCTCGACAGGTTAAGAATGCACTCATAGTGTGAGGTATGATTGTGGATCATTGATTTTTCTTTACGCTCGTAACTTTTGtcatgtcttttgttttgtgCAGGGAAAACAGTTCCCTCATCAAAAATCAGTTTGTCTCACACTGAtaactgtgtgtttatattttttatatctcaGTACAAGAATGTTTTGTACAGTAAAATGATGAGAAACAg

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K12852 EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245151 lncRNA upstream 25622 7054386 ~ 7058819 (+) True G207025
TU245054 lncRNA upstream 82273 6930320 ~ 7002168 (+) True G206955
TU245037 lncRNA upstream 153055 6898842 ~ 6931386 (+) False G206942
TU245030 lncRNA upstream 184509 6898842 ~ 6899932 (+) True G206942
TU245032 lncRNA upstream 184509 6898842 ~ 6899932 (+) False G206942
TU245223 lncRNA downstream 192270 7294485 ~ 7296973 (+) True G207084
TU245258 lncRNA downstream 215812 7318027 ~ 7318360 (+) True G207111
TU245255 lncRNA downstream 216923 7319138 ~ 7321930 (+) False spsb3a
TU245299 lncRNA downstream 283801 7386016 ~ 7388543 (+) True G207140
TU245320 lncRNA downstream 337862 7440077 ~ 7440281 (+) True G207155
XM_034310184.1 mRNA upstream 38463 7020471 ~ 7045978 (+) True LOC117598990
XM_034310239.1 mRNA upstream 51007 7027775 ~ 7033434 (+) True LOC117599002
XM_034310238.1 mRNA upstream 51588 7027775 ~ 7032853 (+) False LOC117599002
XM_026916184.2 mRNA upstream 64800 7007148 ~ 7019641 (+) True eps8l1a
XM_034309690.1 mRNA upstream 64800 7007174 ~ 7019641 (+) False eps8l1a
XM_026917244.2 mRNA downstream 5984 7108199 ~ 7131967 (+) True LOC113528597
XM_026917243.2 mRNA downstream 16308 7118523 ~ 7131967 (+) False LOC113528597
XM_026917242.2 mRNA downstream 21051 7123266 ~ 7131967 (+) False LOC113528597
XM_026917245.2 mRNA downstream 22547 7124762 ~ 7131967 (+) False LOC113528597
XM_026916982.2 mRNA downstream 63989 7166204 ~ 7174621 (+) True LOC113528443
TU244415 other upstream 823584 6254468 ~ 6260857 (+) False LOC117598831
TU244376 other upstream 889477 6190165 ~ 6194964 (+) True ypel3
XR_004579365.1 other upstream 909075 6160334 ~ 6175366 (+) False mapk3
TU244359 other upstream 949870 6130783 ~ 6134571 (+) True si:ch211-198p11.6
XR_004579327.1 other downstream 5963 7108178 ~ 7115935 (+) False LOC113528597
trnac-gca_18 other downstream 170245 7272460 ~ 7272531 (+) True trnac-gca_18
trnac-gca_21 other downstream 197398 7299613 ~ 7299684 (+) True trnac-gca_21
TU245701 other downstream 750976 7853191 ~ 7853509 (+) True G207480
trnas-cga_1 other downstream 905971 8008186 ~ 8008267 (+) False trnas-cga_1

Expression Profile