RNA id: XM_034310316.1


Basic Information

Item Value
RNA id XM_034310316.1
length 1772
RNA type mRNA
GC content 0.45
exon number 10
gene id si:dkey-225f5.4
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9886784 ~ 9893496 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggcGACTGAAAGAGCAGTAGCGTACGTTACTAGAAAGAACTGACCCTTCTCTTTTGAAGACATGCGAATCCACCGAGGCTCAGGACGCTGGAGAGGGAAAAGTTATGACAGCTTATTTAATGGACTGCAGACGGAAACAGAAGATCATGTGCCAACAGTATGGTGTGATGGATGATATGTTGAAGCTTCTTGCAGGTCTGGAGTCAGCAGAACAGTTCCTGAATGAACCATGTCCACCCAAACCAGACAATGAGGCCAGCCCTCCCTGGAAGGCTTTGAAGGCAGAGTATCTTGAGCACGTCCAGGAAGTGGAGGGGCTGATAGGCACACTGGTGGAGTGCATGGAAGAGCTACTCAAAAAACGGCAAAGGCTGGAGGCTCTGCTCGTTGCCCTGGAACAGAAAAAAGAGGAGTGCAAGGAACAGGAGCGAGCTGCACTACAGTCGAAGCAGAGAGCTGAGAAACAGATGAATCTGCAAATAGACGATTCCCTGCAGAGAGCCCATGATGCCTTGCGTGCTTGTGACAGACGGTTTTCTGAACTCAAAATTCAAGTTGATGAACAGTTAGCCAAGGTGGCTAATTGGACGGCTTTTAGAGACAGGTTGCAGGCTACCCTAGAAGTCACTCAGGCTAATATGCAGTACAGGTTGTTGTCTGCGAGCCCCTCTGAGATGTGTCTAGAGCTTCTGCCCCGCTCCACCCAGCAGTCCCTGCAGcctctgcatctgtctgtcACCATGACCACAGAAGACCACTTCCGCCTGCAGGTTTTTCAGGGCACTGCAGGCCTCTTAGAGGAGTCAGTGGAAGGCCCTGTAAGAGAGCTGAGTGCTGCACTGTTGGAAGTGATGGAGTGCTACATTAGTCAAGGAAAGATGCTTGCTGAAATCCAGGCTCTGCATTCCAGGTTTGCAATTGACTGGTGTCCAGCAAAGCGCCTGCTGATCTTCCTCAAGTCCGCCACCACAGTGTGCCACCTGGAGCTGGACGAGGGCTATCCATCAAGTGGCCGTGCCAAACTGCTTGCTGTGCGCAAAGATGGCAACCTTCTCAATCTCTCTGCCCTGCAGCCCCCTGTGATGAATCCTACTCTGACAGATTGGCTTGAGTTTCTCTCGTCATACCCAGATTTCTGAACACTGCCTGCAGCATCATGCTAGTCAGGTGAACTGCAGTGTCCAAGTGAATCAGTACAAAATTTTTTTACTATGGCTGTATCTCAACTGTATGTGTATACTAAAATAGTCTTTTGTTTCAACTGGTAATGtatataaactgaaaaaataattatCCAGTGAGATTAGTACCTGTCTACACCAAGTAATGCGTTAGCCGGAACAGATTTTGAGCATCAATATGTACATCAAGTGTtgtcttttctgtgtttgttttgttctgtgtattCTATCTTACTGTCCTTATATAGGAAACTCCTGTAGGGTGTACTAaatcattctgtgtgtgtatttgtataataaattcattttttgggggaaaaaaagtcccACAATAGGTAGTTTAAAAGGACTTTTATCCAATAGAAAATGTAGAGAATTATAGAGAACTGATCCAGTGTTATATCTCACTCTATACACTCACTAGCCACTtaaataggaacacctgtacctcttctcattcatacatttattcaaTCTGCCCAACATATGGTGGCATAAAACCAtacacatacaggtcaagagcttcaagtaatgttagtaatgttgacatcatacatcagaatgggtggggaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246996 lncRNA upstream 3675 9864977 ~ 9883127 (+) True G208504
TU247001 lncRNA upstream 27920 9846084 ~ 9858882 (+) True G208507
TU246950 lncRNA upstream 138792 9746285 ~ 9748010 (+) True G208472
TU246951 lncRNA upstream 138792 9746850 ~ 9748010 (+) False G208472
TU246862 lncRNA upstream 147936 9737009 ~ 9738866 (+) True G208415
TU246973 lncRNA downstream 145913 10039409 ~ 10061965 (+) False G208488
TU246974 lncRNA downstream 145913 10039409 ~ 10061965 (+) True G208488
TU246978 lncRNA downstream 145913 10039409 ~ 10061965 (+) False G208488
TU247237 lncRNA downstream 327787 10221283 ~ 10221539 (+) True G208700
TU247238 lncRNA downstream 332087 10225583 ~ 10226503 (+) True G208701
XM_034310315.1 mRNA upstream 6917 9840890 ~ 9879885 (+) True igf2bp1
XM_026916900.2 mRNA upstream 59793 9814084 ~ 9827009 (+) True ube2z
XM_026916012.2 mRNA upstream 75221 9806798 ~ 9811581 (+) True atp5mc1
XM_026916970.2 mRNA upstream 104880 9779523 ~ 9781922 (+) True eve1
XM_026917137.2 mRNA upstream 398261 9477811 ~ 9488541 (+) True nfe2l1a
XM_026917260.2 mRNA downstream 19272 9912768 ~ 9917101 (+) False msl1a
XM_026917258.1 mRNA downstream 19369 9912865 ~ 9917101 (+) True msl1a
XM_026916963.2 mRNA downstream 24466 9917962 ~ 9926203 (+) True casc3
XM_026916700.2 mRNA downstream 50810 9944306 ~ 9987773 (+) True rapgefl1
XM_026916863.2 mRNA downstream 299308 10192804 ~ 10195206 (+) True LOC113528352
TU246534 other upstream 823487 9061565 ~ 9063315 (+) False nupr1b
XR_003402909.1 other upstream 984125 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 1878535 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 2033293 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 2587118 7299613 ~ 7299684 (+) True trnac-gca_21
XR_003402918.2 other downstream 50810 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 455906 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 478919 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 519488 10412984 ~ 10417881 (+) True G208781
XR_003402977.1 other downstream 1643551 11537047 ~ 11537165 (+) True LOC113528662

Expression Profile