RNA id: XM_026916954.2


Basic Information

Item Value
RNA id XM_026916954.2
length 2608
RNA type mRNA
GC content 0.52
exon number 16
gene id mcm7
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19888315 ~ 19900984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGTCTAGGGCTCAGAGCGTCCTGTGTTCTCATTGGCGGAGAGTGAGAGAAGACTCGCGCCAGTTTTCGCAGTAGTTCTTGATTGTGGGCAGCGTGTATATCTAACGCAAGGAATAagatatatatagttttaaagAAGTTAAAACATCTCGCGGTAATTTGTGCCACATTCTGTGTGGATTTTAAAGGCTTGGGTGTCGGAAtctttttttggctgaaaaatgGCACCGAAAGACTACGCGGCGGAGAAAGagaaatgtaaGCGCTTCCTGCAGGAGTTCTACACTGAAGATGACTCTGGGAAGAAGGTCTTCAAATATGGCGCTCAGCTGGTGTCTTTGGCTCACAGAGAGCAGGTGGCGTTGGTGGTTGATCTGGACGACGTAGCAGAGGAGGACCCGGAGCTGGTGGAGAGCATTTGTGAGAACACCAAGCGATACATCGCACTGTTCTCTGATTCTGTGCACGAGCTACTGCCCGAGTACCGAGAGcgtgagGTGGTGGCTAAAGATGCTCTTGATGTTTACATCGAGCACCGTCtgatgatggagggaagaggtCGCGACCCTAACGACACGCGTGATCCCAGGAACCAGTACCCCGCTGAGCTCATGAGAagattcgAGCTGTATTTCCGTCCTCCTTCCTCCGCTAAGCTAAAGGTCATCAGGGATGTTAAAGCAGACTCCATCGGAAAGCTGGTGACAGTCCGAGGCATCGTTACCAGGGCATCTGAGGTCAAACCCATGATGGCAGTCGCCACCTATACATGTGACCAGTGTGGTGCAGAGACTTACCAACCGATTGCATCGCCGAGCTTCACGCCGCTGATCATGTGTCCGAGTCAGGAGTGTGTGACCAACAGGTCGGGAGGCCGTCTGTACTTACAGACACGCGGTTCGAAGTTCGTAAAGTTCCAGGAGCTGCGCATCCAGGAGCATAGTGAGCAGGTGCCGGTCGGTAATATCCCACGCAGTATGACCGTGTCAGTGCGTGGAGAGAACACGCGTGCAGCTCAGCCTGGAGATCATGTGACCATTTCTGGCGTTTTCCTTCCTCTACTACGAACTGGATTCAGACAGGCTGTACAGggTCTGTTATCAGAGACGTATCTGGAGGCGCACTGTATCACACTGATGAATAAGACTGAGGATGATGAACTTGGGTTGGAGGAGCTTACTGATGATGAGCTCAGACAGATCACAGagGAAGATTTCTATGAGAAACTGGCAGGTTCAATTGCGCCGGAGATCTACGGTCATGAGGACGTGAAGAAGGCTCTACTGTTGCTGCTGGTGGGTGGGGTTGAGCAGAATCCACGCGGCATGAAGATCAGGGGTAACATTAATATCTGTCTGATGGGAGATCCCGGTGTGGCCAAATCTCAGCTGCTGTCTTACATCGATCGCCTGGCGCCACGCAGTCAGTACACGACTGGGCGTGGCTCGTCAGGTGTGGGCTTGACAGCAGCAGTGATGCGTGATCCTGTCACTGGGGAGATGACGTTAGAGGGTGGGGCTCTGGTTCTGGCTGATCTGGGCGTGTGCTGCATCGATGAGTTTGATAAGATGGCTGATGCGGATCGAACCGCTATCCACGAGGTCATGGAGCAGCAGACCATCTCCATTGCCAAGgcAGGGATAATGACGTCTCTGAACGCACGCTGCTCTATTTTGGCGGCTGCAAACCCTGCATTTGGCCGCTACAACCCAAGGAAGAGCATCGAGCAAAACATCCAGCTTCCGGCAGCGCTGCTGTCACGTTTTGACCTGCTTTGGCTCATCCAGGACAAACCGGACACCCAGAAAGACCTGCAACTCGcacagcacatcacacacgtcCACCAGCACTGCAAACAGCCgcccacacactacacacctatCGACATGAAACTcatgagGCGATATATCAGTAAGTGTAAGAAGAAGCAGCCTGTCATCCCCGAGGGCCTGACTGATTACATCACAGCTGCGTATGTGGAGATGAGGAAGGAGGCACGAGTCAGCAAGGATACCACCTTTACCTCCGCTCGTACCCTACTGTCCATCCTGCGCCTGTCCACAGCTTTGGCGCGTCTCCGTATGGTGGACATGGTAGAGAAGGAGGATGTAAATGAAGCGATGAGGCTGATGGAGATGAGCAAAGACTCACTGCAGCCTGACAAGACAACTACcaccaggtcccAGCGCCCTGCCGACGTGATCTTTTCTCTGGTGCGCGAGTTGGTGTCTGAAGGCGGGAAGGTGCGGGCGGTGCGCATGGCTGATGCAGAACACCGGTGTGTGTCGCGCGGTTTCACTCCGGCTCAGTTTAATTCTGCGCTTCAGGAGTATGAAGAGCTCAATGTGTGGCAGATCAACAACACGCGCACACGCATCACCTtcgtctgatacacacacacacatgcacacgcttCTGCAAAGCCTTCTTTTAACAcacctctgtctgtgtgtttgctggtTAATCGGCTGTGGCTTATTAGCATATTGCTATCGGACTTTTGTTATGGCCTTCCTGTTCAAGATGAATAATATTGAGagtttgttttattctgtacatatTACTCCCTTAATAAAGCTCTGCACGTACATATCTAGTTTGATGCCA

Function

GO:

id name namespace
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02210 MCM7, CDC47; DNA replication licensing factor MCM7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579341.1 lncRNA upstream 95656 19784413 ~ 19792659 (+) True LOC117598770
TU253255 lncRNA upstream 172756 19698004 ~ 19715559 (+) True G213864
TU253224 lncRNA upstream 181465 19664704 ~ 19706850 (+) True G213834
TU253176 lncRNA upstream 257004 19630891 ~ 19631311 (+) True G213792
TU253054 lncRNA upstream 416959 19469862 ~ 19471356 (+) True G213678
TU253387 lncRNA downstream 11155 19912139 ~ 19912375 (+) True G213984
TU253415 lncRNA downstream 67024 19968008 ~ 19970156 (+) True G214012
TU253526 lncRNA downstream 170711 20071695 ~ 20181878 (+) False G214098
TU253520 lncRNA downstream 240431 20141415 ~ 20144597 (+) True G214098
TU253523 lncRNA downstream 240431 20141415 ~ 20152693 (+) False G214098
XM_026915985.2 mRNA upstream 2760 19860406 ~ 19885555 (+) True LOC113527852
XM_034310318.1 mRNA upstream 2760 19860406 ~ 19885555 (+) False LOC113527852
XM_026915987.2 mRNA upstream 2760 19860406 ~ 19885555 (+) False LOC113527852
XM_026915986.2 mRNA upstream 2760 19860409 ~ 19885555 (+) False LOC113527852
XM_026917158.2 mRNA upstream 45633 19826650 ~ 19842682 (+) True LOC113528548
XM_026917018.2 mRNA downstream 7183 19908167 ~ 19910875 (+) True LOC113528458
XM_026916788.2 mRNA downstream 32840 19933824 ~ 19949014 (+) True LOC113528304
XM_034310034.1 mRNA downstream 62736 19963720 ~ 19996933 (+) False zbtb49
XM_034310033.1 mRNA downstream 82639 19983623 ~ 19996933 (+) True zbtb49
XM_026917103.2 mRNA downstream 82639 19983623 ~ 19996933 (+) False zbtb49
XR_004579333.1 other upstream 575097 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 743075 19144074 ~ 19145240 (+) True G213491
TU252614 other upstream 968443 18914726 ~ 18919872 (+) True smim22
TU252615 other upstream 968443 18914726 ~ 18919872 (+) False smim22
XR_004579361.1 other upstream 1546378 18184019 ~ 18341937 (+) True LOC113528485
TU253379 other downstream 5218 19906202 ~ 19910165 (+) False LOC113528458
XR_004579366.1 other downstream 32840 19933824 ~ 19953286 (+) False LOC113528304
TU253418 other downstream 77330 19978314 ~ 19981380 (+) True G214015
XR_004579430.1 other downstream 121525 20022509 ~ 20076408 (+) False LOC113528520
TU254301 other downstream 1439432 21340416 ~ 21349086 (+) True hopx

Expression Profile