RNA id: XM_026916963.2


Basic Information

Item Value
RNA id XM_026916963.2
length 2642
RNA type mRNA
GC content 0.54
exon number 13
gene id casc3
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9917962 ~ 9926203 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTTGCGCACTTCCGGTTCCCCTTCCTTGTGTGCTAAGATGGCGGACCGGCGACGACGAAGGAGGCGCGCGTCTCAGGACAGCGAGGATGAGGACGAGTCTGCGTCCGGGTCGGAGAGCGGGAGATCGGCTTCCCCCAGCGGGAAGAGCCGCGCTAGAATCCCCGAGCCGGGAGAGTCTCCAGCCGCGCGCGTTGGCGCGAAAAGCGACGTCGAATccgagtgtGAAAGTGAAGATGGTGTAGGTGAAGCTGTCCTTTCTGACTACGACAGTGCTGATCCGGAGGAGAACGGCTCGCACTCGGAGGGAGgagaggacgaggaggaggagggtgaaCACTTCAGTGATGACGACGCTGCTCGCCCAGCCGCAGAACAGAAAGCAACAGCCGATGTTCCTGCTGAAGGTttgggagaggaggaggaagaggaagaagaagaagaggaggaggagagagacatAAAAGAAGTGAAAGCTGATGAAAAGGGCAACTTGGCAGGGGAGAGGCAGAGTGGAGATGGTCAGGAGAGCACAGATGATCCTGAGAACAAGTCAGCTAGTAAAGCTGGTCAGAAGTTGGATGATGATGAAGACCGGAAGAATCCAGCATATATCCCCCGGAAGGGCCTGTTTTTTGAGCATGATGTGAGAGGCCAGGCTCAGGATGAAGAGAGGCCTAAGGGCAGACATAGGAAGTTATGGAAAGATGAGGGTCGCTGGGAGCACGATAAGTTCCGGGAGGAGGAACAGGCCCCTAAATCACGCGAGGAGCTGATTGCTGTTTACGGTTACGACATTCGTAACGGCAATGGCCCCAGTGACACCAGACCATTCAAGCCACGAAAGCCCAGGCATCCTGGCCCGCTAAACCAAGAGTCCAAGCGTTACAGGGATGGTGAGAAGCCCCCCCGCTCCTCATGGCATGGTGCGGCTCCCAGTGCCCGTGGTGCCCCCCTTGTGACAGTAACTTCCCAGTCAGGTGTTCCTGCTGCTCCTCGCCCCCAGAATAGGCCCTCTACCCAGCCCCCTGCACGCACCTTCCAGAGCAGCCGTCGGCCTGAAATCAGAAGTCATCCTAAGGCCACCACGCGACCCCAGGCTCCTGAGAGTGAGAGGGCACCCAGGCTCAGGGGCCGAGGTTCTCATGGACCATCTCACCATGCCCAGCGCAGCCCACAAGAGGATGACGAAGAGGAAGGCGAGATTCCCACTGTAGCCACCACTTACACTGCCCATTATTACAAAACTGAACAGGAGACAACCTCTTCATCGCAGCAAAAGGAGGAGTGTGGAACAATGGAGGAGCAGCAGTCGAGCACACCTGGCACAGTAAGAGAGGTGTCACCACCTCCTGAGAGGCCAGTGGAGAAAAAATCCTACTCTCTGGCACGTAGGAGCCGAGCCAGGCCCTTGGACCTTAGCAAGCAGGCCTCTCTGGAAGAGGCAGTGATCACCCCACAGGTTATGCCCACTGCTGCCAAGACTGAATCATGGCAGGGACAGGGTGAGACGGGCACACAGAGTGGCCTGTCAAGGCTCGATCAGGATCTGGCTCGTCTCAATCTGGCTGGGCAAAACTGGACCCAGAGTCCAACCTCATACCTCCGGCCTGAGATGAGGGGCATCCCTAGTTCTATACATATGGGAGGTGGTCCTCCTCAATATGGCAATATGGAGGACATGGGTGTTGGTGGTGGCCGGGCTAAGCGGTATTCGTCTCAGAGGCAGAGGCCAGTGCCTGAACCAGCGCCAATGCACATAGGGCTCATGGAGGGCCACTATTACGAACCCATGTCATTCCAAGGACCAATCTACACACATGGCGACAGTCCTGCTCCCATGCCACCACAGGGGCTGTTGGTACAACCAGAGATGCACCTGCCCCACCCCACGCACCCCGGCTTGCATCCACACCAGTCAGGAGGACCGATTCCGAACGCTGCGCTTTACGCTGCTCCACCCGTTTCTTTGTCTCCTGGACAGCCACCCCCACAGCAACTGCTAGCCCCACCCTTCTACCCTCCACCTGGAGTCATGACATTTAGCAACACCAACTACCCTTACCCTGCTGGAGCTACACTACCCCCCATGTACCCCAATGCACAGGCTCAGTCACAGGTGTATGGTGGAGTGACGTATTTTGACACAGTACAGCAGCAGGCTCAACCCAAACCTTCTCCACCACGCCGCACTTCACAGCCAGTCACAGTCAAACCTCCCCCACCAGAGGACCAGAGCAGGAAGCCCAGTGAGGAGGTGCGCTCCTAGCTGCTGCTGAAAGAAGTGACCAGGACCAGCACCACTTGTGGATGAATATATTTTCGCTTTGTtacatcacctttttttttcttttctttttttttttttttaaaggaaaaacttgcaatgtttgattttattcattttgttaagCATGTCCACATTTACCTTCATGCAAGGCCCTCCTCGCGAGTCATGTCTCGATTGTATTTTTCATCACCTGATCTGTTTGCAGTGTACTGCTTCACTCTCTCATCAAAGCATGTATTAGTTCCTGAAGGAAATGTACTGTAAAATATACGTCAAGCCGGCACAGAAAGAGGTTTCGCTGCTATTAATCACTATCATAATCATTATCAATAAATGTCACGTTGTACTAATAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006810 transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14323 CASC3, MLN51; protein CASC3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246996 lncRNA upstream 34835 9864977 ~ 9883127 (+) True G208504
TU247001 lncRNA upstream 59080 9846084 ~ 9858882 (+) True G208507
TU246950 lncRNA upstream 169952 9746285 ~ 9748010 (+) True G208472
TU246951 lncRNA upstream 169952 9746850 ~ 9748010 (+) False G208472
TU246862 lncRNA upstream 179096 9737009 ~ 9738866 (+) True G208415
TU246973 lncRNA downstream 113206 10039409 ~ 10061965 (+) False G208488
TU246974 lncRNA downstream 113206 10039409 ~ 10061965 (+) True G208488
TU246978 lncRNA downstream 113206 10039409 ~ 10061965 (+) False G208488
TU247237 lncRNA downstream 295080 10221283 ~ 10221539 (+) True G208700
TU247238 lncRNA downstream 299380 10225583 ~ 10226503 (+) True G208701
XM_026917260.2 mRNA upstream 861 9912768 ~ 9917101 (+) False msl1a
XM_026917258.1 mRNA upstream 861 9912865 ~ 9917101 (+) True msl1a
XM_026916952.2 mRNA upstream 24466 9886784 ~ 9893496 (+) True si:dkey-225f5.4
XM_034310316.1 mRNA upstream 24466 9886802 ~ 9893496 (+) False si:dkey-225f5.4
XM_034310315.1 mRNA upstream 38077 9840890 ~ 9879885 (+) True igf2bp1
XM_026916700.2 mRNA downstream 18103 9944306 ~ 9987773 (+) True rapgefl1
XM_026916863.2 mRNA downstream 266601 10192804 ~ 10195206 (+) True LOC113528352
XM_026916903.2 mRNA downstream 288842 10215045 ~ 10222874 (+) True LOC113528384
XM_026916301.2 mRNA downstream 372684 10298887 ~ 10341715 (+) True helz
XM_026916197.2 mRNA downstream 499856 10426059 ~ 10448685 (+) True lmtk2
TU246534 other upstream 854647 9061565 ~ 9063315 (+) False nupr1b
XR_003402909.1 other upstream 1015285 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 1909695 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 2064453 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 2618278 7299613 ~ 7299684 (+) True trnac-gca_21
XR_003402918.2 other downstream 18103 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 423199 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 446212 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 486781 10412984 ~ 10417881 (+) True G208781
XR_003402977.1 other downstream 1610844 11537047 ~ 11537165 (+) True LOC113528662

Expression Profile