RNA id: XM_026916968.2


Basic Information

Item Value
RNA id XM_026916968.2
length 3912
RNA type mRNA
GC content 0.48
exon number 15
gene id usp43b
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12695369 ~ 12775815 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGacagcacacaaacagaaaagaaaaattatttattcatgaagCTAGACTTTGCTGACAGCAAAATTCAAATAGAAGCTTGCTTCTTACTTTATGATTGTGTCCAAGTATGGTTCTCAGTTCCGAGGGAATTCCCAACACGATGCTCTGGAGTTCCTGCTGTGGCTGCTTGACCGCGTCCATGAAGACGTCAACTCCTCATTATCGTCTCCAAGTGGAAACAACAGGATCAAAGCCAATGGAAAGgATAATGCAGGAGGGGAAGAATTAGCTATCTCTGAGCTTCCAGATCAGCAGCCTGGTGTACGTCACAGCTTTGTACAGGAGCACTTCCAGGCCCAGTACAAgtcaTCTCTGACATGTCCTCATTGCCTTAAGCAGAGTCACACCTTTGATCCCTTCCTTTGCATCTCTCTTCCCATCCCTTTGCGTCAGACCAGGCCACTGTGTGTGACTCTGGTGTTCAGCACTAAAGGGCAGAGGTACTTAAGAGTGGGACTGGCTGTGCCTTTATTCGGCTCTCTGGCTTGCCTGCGCAGAATGGTGGCAGATGAGGGCAAGATTTCCCCGGACCAAGTGATTTTGACTGAAATTTACACTACTGGTTTCCAGCGCTCTTTTTTTGATGAGGATGACTTGACCAGCATCGcagaaaatgacatcatttatGCCTTCCAAGCCCCACCCCTTTACATCAGGGGAGGATCCACTAGAATATCAGGCTACCACCACAGTCTCCCTTCTTCCCCATACTCCTCATCTGGGCCCGAGGCTCAGAGACTGGCTGCATCCGGGGCACTCTCCTCCGAGTTCCTCAACCATGGAGGTGGAACAGCAAAGATTCTCCTGCTGGTGTGTAATGCAGCTGGAGTAGGCCAACAAGCTGTGAGGTTTGGTCCTCCATTCCTGATGAGAGAGGACAGGTCAGTATCATGGGATCAGCTGCAGCAGAGCATCCTCAGTAAGCTCTACTACTTGATGATCAGTGGAGCACAGCCACAGAATAACAGAGTCCTGTTTAAGATCCGTGTTGTTGGGGGATCAGTGTCCTGTAGCTATTTGAGTCCACAGGATGGACGTCCACTTTACCATCCTGCAGTAGACAGAGCTCTAAAGCTGTGTGGCTCTGGCGGTCCTCCACATGTGAAGCTCATTGTAGAGTGGGAACACAGAATAAAAGACTGtctcttTGGTAACATCCAGGAAGAGGTGGTGAAGGATTGTGAGAGTGTACGTacccagcagcagcaacatgTTCAGCAGCATAGCTGCACACTGGACGAGTGTTTTCAACTTTATACTAAAGAAGAGCAGCTGGCTCCAGACGATGCGTGGAAGTGTCCTCACTGCAAGCAGCTGCAGCAAGGCATGGTTCAGATGAGTCTGTGGACACTCCCAGacatcctcatcctccacctcaaGCGCTTCAGGCAGGTGGGCGAACGACGAAACAAGCTCTCCACTCTGGTGCGCTTCCCTCTCACAGCCCTGGACATGGCACCCCACATGGTCAAGAGGAGTAACTGCACCCGCCTGCCTTCCACATGGAAACAGCAGCTTCATCAAAGGACTGAAACAGGACAACATCCTGAGGACTTCCTGTACGACCTGTATGCTGTGTGTAACCATCATGGAGGCATGCATGGAGGTCACTACACAGCATACTGCAGGAACTCAGTGGATGGCCAGTGGTACGATTATGATGACAGCAGCGTAGAGCCGGTGCCTGAGGGGGAAGTGTGTACACGTGGGGCTTATATCCTCTTTTACCAGAGACGCAACAGCATCCCTGCATGGTCAGCTAGCTGCTCACTCCGAGGCTCTACAAGCTCCTCCATGTCTAATCACTGGCTTGTCCGTTTGACATCTGTGTCAGAAGAAAGCCAAACCTTGAGTCTCACGACCAAGGCCTCTAGCTGCTCCTCAGCTCCTGAACCTCAAACGCCAACTTCTCCTGTTTTCTATGAGCAGCCAAAAGGAGATGCTGATGGATTTGAGTCAAGACCATTTGTCCGTGGCACCCAGGGCCGTAGTGTAAGCCTGCGTTCACCCACCAAGAACAAGGACAACCTGAGCAAAGTGCTTCCTCTACGTTGGTCTTTTGGTTCCAAGGACCGTAAGAAAGTCACTTCTGTCCCTCAGACCACACCACCACGGCCTGGAGAACTGGTGGAGTACCTGGAATCTGGACGGAGGCCACGGTGCACCAAGGAGCCCATAGTGAGCCTGGTGGCTAGTCCTGCACAAGGTAAAGCCCAGCTTCCTGTGGAAGACTCGCTCAGCTCCCCTAGTGGCAGCAGCAGCTTTAGTGGAGCGGAGCGAGGAAGCTGTCGTGAGCCAGACTCCCCTCGAGTACCTGAAGGCCAGAGCCGACCAGCTTCAGACAGAGGCACTACTAAAGGCAGAGATGAAGGTTTACTAGCCAGGAAGGCTTCAAAGAGGAGGCAAGAGCAACACGGAAAGACTCAAGATGGTCAGTCTCGTCGAGAATCCGCTGCTGGGCTTCAGCCTGGGACTAGCACAGGTCAAAGTTTTGCAAACAGCACAAGTGAAAGCAAAGATTCCACATTAAAGCGAGTTTGGAACCAGCCAGCTGGAGCTACCAGGACTTTGTGTAGTCAAAACCAGCAAGATGATGTTGCAGGGAGCAGGAATGAGGAGACTCAGGGCATCCCAGCATTCCTTATGCCAAGCAATGTTAAGAAAGACAGCCAGTCGAAGGACATACGTGCCAAAGAAGCAGGTCAAGGAAGAACGCTAACAAATAAGAGCTCGAACAAGCTGTCCATGTCCAACGGCACTCCAAATGGACTGGTAGTGGAGGAGAAAAAAGGCAGTGGCACCCAGAGGTGCAGCAGTGCACGGTACTACAACAAGACTCTGACCAATGGAAGGGAAACCCACAGTGGCGGTGGGGGGGATATTAAGCGAGCGCTGAGCTCTTCCAGCCTTCAAAGCAGGCTGGATCCGAATCTGAGGAGGACGGTGTCCCTCCAGAGGAACGGGCTCATGGTTCCTCCTCAGAAGGGACACACTACTGATAAACCGTCCTACAATACACTGCAGAGGAACAGATATAGCACCACTTCACTAGGCAGACAGAGACCAGTGCCCGAATCCTGTTTCTGATATCAGGAttgctgaagtgtgtgagtgtttggtTTAGGTGCAAATAATTCCAGTTTGAGTGCCTCCCCTGAAGAGAAGATACTTAGGGTACTTTCACCAAGGCTCCTGTTGAAGGCAAGAATACAGATACaacaaaattgcatttttaaacaaatcatttttaattctgtaacagaccagttaataatgttttttttttcatgtagccCACAAATTAACAAGAATTTGAGctagattattatttatttagtttagcTTTTATTCAGTGCATCATCTCTGCTGTGTCATCTGAGTCTGTGTCATACGAGTGCTGTGGCGCTAGACAGGAAAAGTAATGGAATCATGAAAGATTCACATTCTTCTGAGTCACATTATGTGTCAGGCTTATAATAACTAGCTGTTACCTAAGGAATGAAAACATAacgggacgtgctgttatagcaaaataatcaacgacgatGTAGAATGATGTTTGCTTACAagagttttatttatcttattccacagcaatttgccaacgattacaattctttatttattacagaacaatATGCCATACTTTATATCggttttatattaaatagttatatttaatgtcatggaacatctACGAAAATgggttaattcctgttatcacttacgctgtggcagctataaatagtcgttcCCACGCTTTATCTTTAAAtttataagttaaaaaaaaatgcagcttgttacagagaaatcatACAGAGcaaactcatctgtcctgaagactttcccgtggcacgtctgactgttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248885 lncRNA upstream 161793 12546433 ~ 12548503 (+) True G210086
TU248698 lncRNA upstream 329310 12378946 ~ 12380986 (+) True G209945
TU248695 lncRNA upstream 331883 12378159 ~ 12378413 (+) True G209944
TU248694 lncRNA upstream 332212 12375907 ~ 12378084 (+) True G209943
TU248692 lncRNA upstream 332789 12375907 ~ 12377507 (+) False G209943
TU248969 lncRNA downstream 3434 12779249 ~ 12780136 (+) True G210160
TU249018 lncRNA downstream 45261 12821076 ~ 12821284 (+) True G210209
TU249234 lncRNA downstream 269175 13044990 ~ 13045833 (+) True G210384
TU249423 lncRNA downstream 589869 13365684 ~ 13365893 (+) True G210532
TU249525 lncRNA downstream 668933 13444748 ~ 13445227 (+) False znf653
XM_026916033.2 mRNA upstream 48680 12616284 ~ 12661616 (+) True ntn1b
XM_026916888.2 mRNA upstream 219349 12487277 ~ 12490947 (+) True tob1a
XM_026916336.2 mRNA upstream 274647 12396504 ~ 12435649 (+) False spag9a
XM_026916610.2 mRNA downstream 8482 12784297 ~ 12817380 (+) True grb2b
XM_026916504.2 mRNA downstream 54380 12830195 ~ 12862010 (+) True bptf
XM_026916505.2 mRNA downstream 54380 12830195 ~ 12862010 (+) False bptf
XM_026916506.2 mRNA downstream 54380 12830195 ~ 12860776 (+) False bptf
XM_026916508.2 mRNA downstream 54381 12830196 ~ 12862010 (+) False bptf
XR_003402925.2 other upstream 521707 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 1132473 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 1173131 11537047 ~ 11537165 (+) True LOC113528662
TU247338 other upstream 2292415 10372415 ~ 10417881 (+) False G208781
XR_004579399.1 other downstream 700013 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 3037427 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 3142402 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 3364515 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 4311476 17087291 ~ 17109275 (+) False srl

Expression Profile