RNA id: XM_026916975.2


Basic Information

Item Value
RNA id XM_026916975.2
length 4223
RNA type mRNA
GC content 0.47
exon number 22
gene id traf7
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19273062 ~ 19288073 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTGTGAGGGCGTGAGCGTTATGAGGGAAGATGAAAAATTTTCGCAGCAGACTTTTCGCGCACTGGTAAAGAATCCTTAGAAAAATGTTCATGGTACATGTTTAAATGTTGGGTAAAGGAGTAGAATAGAGTCGAGGTGTGTTGTAGAAGTCATTCTTGTTGTCATGTTTGGATTTTGCGGAACGTGGCCGAAACCAAGTTGGCTGTGAAAGCCTTTCTTCCTTGTAGCGTTTGATGGATTATGAGCTCTGGTAAAACGTCGCACTACAGCCATTTATCAGGAGAAGCGACATCCACTGCAAGCATCAGCGCCTGTTCGTCTGATATCAACCACACgGTCAGAATGGAGAGCACATTCGGGCCGACGTTTTCAGGAGTTGCCCCAGTTAGCAAAGCTGAGACATCCAGTAATTATAAACAGCACCGTCGAACACCTTCTACCTCCAGCACGCTGACTTTCTCCGCTCGAGACGATGACGACGGCATGcCACCCATCGGTACTTCACGTGGTTCGGACTCGGCCATCTCCGTTCGTTCTCTTCACTCGGAGTCCAACATGTCCCTGCGCTCAACTTTCTCCCTgcatgaagaagaggaggataCGgATCCGCAGGTTTTTGCTGAGCAGCCTTCAGTTAAACTGTGCTGTCAGCTGTGCTGTAACGTGTTTAAAGACCCCGTCATCACCACATGTGGGCATACCTTCTGCAGGCGATGTGCCTTAACCTCCGagAAATGCCCAGTGGATAACTCGAAGCTCACCGTGGTGGTGAACAACATTGCTGTGGCCGAGCAGATCGGTGAACTCTTCATTCACTGTAAATATGGTGTACGTCCCACCGCTTCAGGAAAACCAACTGCCTTTGAGGTGGATCCACTCGGCTGCCCTTTCACCATCAAACTCAGCACCAGAAAagatcACGAGGTGAGCTGTGACTACCGGCCGGTGCGCTGCCCGAATAATCCCAGCTGTCCTCCCCTGCTCACTATGAACCTGGAGGCTCATCTGAAGGAGTGTGAACACATCAAGTGCCCACATTCAAAATACGGATGCACGTTCATTGGGAATCAGGACACGTATGAGACGCACCTGGAGGCGTGTAAGTTTGAGGGGCTGAAGGAGTTCCTGCAGCAGACAGACGATCGCTTCCATGAGATGCAGGTGACTCTGGCTCAGAAAGATCAGGACATTTCCTTCCTACGCTCCATGCTGGGCAAATTGTCAGAAAAACTTGACCAGCTCGAGAAAAACCTGGAGCTCAAGTTTgATGTGCTGGATGAGAACCAAAGTAAACTAAGTGAAGATCTGATGGAATTTCGTAGAGACGCCTCGATGCTTAACGATGAGCTTTCACATATTAATGCCAGGCTTAACATGGGCATCCTCGGCTcctATGACCCGCAGCAGATCTTCAAGTGTAAAGGCACATTTGTGGGTCATCAGGGTCcggtgtggtgtttgtgtgtttactcCACCGGTGACCTGCTCTTCAGCGGCTCCTCAGACAAAACCATCAAGGTTTGGGACACTTGCACCACATACAAGTGCCAGAAAACTCTGGAGGGCCACGATGGCATTGTGTTAGCGCTGTGTATTcaggggAATAAGCTGTACAGTGGCTCAGCAGATTGCACCATCATTgTTTGGGACATCCAGAACTTGCAGAAAGTGAACACAATCCGTGCACATGATAACCCAGTGTGCACGCTGGTCTCGTCACACAACATGCTCTTCAGTGGATCGCTCAAAGCAATTAAGGTGTGGGATATTGTGGGCACGGAGCTGAAGCTGAAGAAAGAGCTCACTGGTCTGAATCACTGGGTGCGAGCTCTGGTCGCATCTCAGAATCACCTCTATAGTGGTTCCTACCAAACCATTAAGaTTTGGGACATTCGTTCTCTTGAGTGCGTCCATGTCCTCCAGACCTCTGGGGGCAGCGTTTACTCCATTGCGGTCACCAACCACCACATAGTGTGCGGCACGTATGAGAACCTCATCCACGTGTGGGATATCGAGTCTAAAGAGCAGGTGCGCACACTAACGGGACACGTAGGGACCGTTTACGCTCTGGCCGTCATTTCCACTCCGGACCAGACCAAAGTGTTCAGTGCCTCCTACGATCGCTCACTTAGGGTGTGGAGTATGGACAACATGATCTGCACGCAGACTCTGCTGCGTCATCAAGGCAGCGTCACCGCACTGGCCGTCTCTAGAGGGCGCCTGTTTTCTGGAGCCGTGGACAGCACTGTGAAGgTGTGGACCTGCTAAAAGAGGAACAACTTCTAAAATCACACAGTGGACCTTTAGTTACTTCCAGCGGTGTGTAAAAACTGTGATTACGTGGTGAAGCTGCATCACTTTTAAAGACAGCAGCCTGAGCAGGAGTGACCTTTTTCCCTGTATTGATCTGTTTCTTGTGATGTGGACACGACTTATCTTGGCTCACACAGCCTTGGACCAGGACTACGGCATCGCCTTAAACCACTCCAAATGACCAGCGTGTAAGAGTCAGCAGTGATGAGACTGAATATACGGTTCTGTATATAGACATTTCACTCGGTTATAATGGTGGCTTCTCTGAACAGCAAGTCACGATGTGATTAAGCATGTCTGAGATGCCTTCTCTACTAGGACTCAGCAATTAGATCATCTGAACTGACCACCTTAACTTTTCTCCACTAACGTTATAAACTGTTTACGAAGCATCCTGCACAGGTCTGGGAACAGAGCTTCGATAATAATTCAGTTGCTTCTAGATTGAATTATGTTACGCGAAGTGCTCACTACACAAGTTTAGCCTTGATTTTGTGCTCATCATTAATCATGTGTTCACACTGGCAGCCACGTGATGTGACAAAACAGGCCAGAGTCACGTACAGCCATGACGCACGGTTAGTGTTTAACACTTCAGAGAATGTGTGAGCAGCCAGAGATGTCATGCCATTTTCCAGCATGTTGGAAACATTGGGTAATAAATCTCAGCATGTGAGCACAGTATGATGTAACGAGTGACGGAGAGCGAGACAGGAAATGAGGACGAGCAAGAGGACAGCTCTCATGGTGAAGGACACTGAGGTCCGTGTGGAACAGGAAATGGAGGGAGCAGGTGTAGCAACGACTACAGCAAACTGCTCATGGCTTCGTTTTAGCAAAGTCACATGATCAAGTTACAAACAGCTAATCAGTATTCACTGTTGCAACGCCAATTTCCAAACCTAGTCCTGAGAGCCAAATGATTCCGTAAGtggaggtggaaaaaaaatgaataaaacctgTTCATATGAtgccaaatcacaggtttttcaTACGAGCAGCTTTGTGACTAACATTTGATATTGCCAAGtgagatttctttctttctttctttctttttttttttttactgtatatacttaaTCACCTAATTAATCAGCAGCACACCATGTTGATGGAAAAATGAAGTTTTCAGTGCATCATTGTCCACTTCCTAGTAATCGAGTCCACTTGGCCATCTTCATCAGCTTGAATGAAGTAGATGAGGGATGGAGTGAATATCACTCTAGACTGCTGTTTCTTTTTGAAATGGTGGATGAAGCTGTTTATACATAGCAATAACATACTTCATATaggatttttttctaaatcGCTCTGCCTCCTCTACAAGTCCTGCATTCATTACTGCAGTTAAACTtgtgtagctagctaaaaatTCTTCTGTATAGCTAGCAGAGgagcgagcgagcgagtgaGCTGATTAACACGTCTGCTTGTGTTGCTAGTGCACACTCTTGATGTAAACGTTTGTCGGGGAGGGTGTGTTAAACAGTATTGAAACACTGGGTCTTTGAACTATTAACCCAAATTCTTACTGTATTACAGCTGATGATAGAGCAGTGCTATGAGCAGCTCCAGCTTTggcgtgtctgtgtttgtgtgtgtctgtaatgcAGAATACACACCGCAACAGGTCCAACTGTCTGGGCGTCTCACCACGAACTGCACTGGTGTTTTATTCAGTCACACATGCACTTCTAACATATAGTGTTAATCATCGTTGACTCAGTTATTCCACTCCTTTGTGTTATTGTAtctactgctctcagccaatcagaacgcacTGTACTGGTGTAAACAGTAGACAAGTGCCGATTATACGTTTCCATTGTTGTTGATAATTGCCTACATTTTTATCATGGTTCATGacattatcacaatattgaatAAATTGTTCTGATGAATGTC

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10646 TRAF7, RFWD1; E3 ubiquitin-protein ligase TRAF7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252899 lncRNA downstream 200077 19025072 ~ 19072985 (-) False G213549
TU252898 lncRNA downstream 241905 19023758 ~ 19031157 (-) True G213549
TU252732 lncRNA downstream 423915 18792435 ~ 18849147 (-) True G213407
TU252741 lncRNA downstream 445630 18823471 ~ 18827432 (-) True si:dkey-204f11.64
XR_004579422.1 lncRNA downstream 895807 18375684 ~ 18377255 (-) True LOC117598999
TU253100 lncRNA upstream 129145 19417184 ~ 19422415 (-) True G213716
TU253270 lncRNA upstream 375298 19663337 ~ 19663762 (-) True G213879
TU253468 lncRNA upstream 652315 19940354 ~ 19984149 (-) False lyar
TU253590 lncRNA upstream 732513 20020552 ~ 20056144 (-) True G214159
TU253634 lncRNA upstream 917755 20205794 ~ 20207145 (-) False hs3st1
XM_026916936.2 mRNA downstream 146731 19107186 ~ 19126331 (-) False crlf3
XM_034310207.1 mRNA downstream 146785 19107186 ~ 19126277 (-) True crlf3
XM_034310282.1 mRNA downstream 304281 18957049 ~ 18968781 (-) True scpep1
XM_026917282.2 mRNA downstream 336553 18922136 ~ 18936509 (-) True rogdi
XM_026916703.2 mRNA downstream 357289 18902663 ~ 18915773 (-) True cog1
XM_034309659.1 mRNA upstream 61344 19349383 ~ 19354576 (-) True rpusd1
XM_026917050.2 mRNA upstream 141178 19429217 ~ 19448559 (-) True rbbp6
XM_026917051.2 mRNA upstream 141178 19429217 ~ 19448558 (-) False rbbp6
XM_034310298.1 mRNA upstream 183645 19471684 ~ 19504307 (-) False cacng3b
XM_026917234.2 mRNA upstream 183645 19471684 ~ 19504307 (-) False cacng3b
trnat-cgu_6 other downstream 196722 19076269 ~ 19076340 (-) True trnat-cgu_6
TU252457 other downstream 895699 18376077 ~ 18377363 (-) False LOC117598999
TU252076 other downstream 1419423 17828167 ~ 17853639 (-) True tsen54
TU252009 other downstream 1597778 17674827 ~ 17675284 (-) True G212750
TU251953 other downstream 1847161 17386211 ~ 17425901 (-) True G212700
TU253095 other upstream 156950 19444989 ~ 19448334 (-) False rbbp6
TU253598 other upstream 752384 20040423 ~ 20063490 (-) False slc2a9l2
trnal-aag_9 other upstream 1124810 20412849 ~ 20412930 (-) True trnal-aag_9
TU254170 other upstream 1726400 21014439 ~ 21027259 (-) True fgf2
LOC113546932 other upstream 2384123 21672162 ~ 21683433 (-) True LOC113546932

Expression Profile