RNA id: XM_026916985.2


Basic Information

Item Value
RNA id XM_026916985.2
length 2947
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC113528445
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14678750 ~ 14690132 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGAAGGCGCTGTGGCTCGCTGAGCTGCAGATCCGAGCGGATCTCACACACATGTGATCATCTGATGAAACCCTGCAGATCAGATGAAAGCCTTCAGAGATCCTGCGCTTTAGTTAATGCAGGGGGGGGGTGCTTTTAGAAGAGCGCTAGTGGCTGAGAggaggatcacacacacacacacacacacacacacacacagtgctggagCGCACAGAGCACCAGGCAGTGAAGGCGGCACTGAAGCTCGTGGTTATGATGAGCTTCGGCGTGGTGGTGATCTCGGCTGGTTTATTGGGACTGCTCAGTTTCACTCTGCTCGCTGTGGCTGTGGGCACCGACTACTGGTACATTATAGACGTGGATCAAGTCATCAACTCCAGCTGGCACTTTGCGAGCTCGCACTCGGGGCTGTGGAGGATCTACGAAGGAAAGAATGGCAGTTTTCATGACATCTCCTTTTACATGGATACTTCTGAGTTCagtgagcaggaaaaacaccTCTTACaCCTGCACAGGGTCATTGTCATCTTGCTGCCTCTCAGCCTGGTGCTGCTGATTTTCGGAGGCATCTTCGGCCTGGTCGGCTCTCTTGCCCGCAGTTATACAATCCTCACTGGAGTGGCTGTGTACTTCCTCATCTGCAGCCTCTTTACACTCTCTGGTGTGTGCATCTACATTAGCTACTCTCAGCAGGCTTTGGACGAACTGCGGCGGCTGCTGAGTGCTGAACTTCTCGCCCACATACACATGTCCTTCGGCTGGTCCCTGGCCTCGGCTTGTCTGTCTTATACACTCGAGGTGGCCTGTGGCGTCCTGCTCATACTCGCAGCTCTTCTTGCTCATCGTGAGCTACACCATGAGTCTACCGCTGCTTTCTCCATGTCCTAGAGACAccacagaggaagcacattttattatttatcactgTTTGCAGCAGGCTTTCTTACAAGAACTTGACTTCAAAGAAGGATGTGGAGGTAAACAAAAGGATCACATATTACTTTATTGGAATTGATTTGAAATTTAATGAGTGTTCATCAGTGTTCATTTTTCAAACTATTTAGGAGTGAATTTGTTAgttataaaaatgcacattttattaatgctgaagctGCTGGATGTTGGAGATTTGGGGATGAATGGTAGAAAACTTCTAGTGCAAGCTGTATGCAAAAAGAGCATCTTGTAATGTGGATTATGCTGTGTCCTTCTGCACTGCATGCATTAATCTCAAAGCTGTGAATGCCAAGTCAATACACATTCAGAAAGactgtgtctgcatgtgtgacTGCAATTTACACACTAAATAACATACATACTGTAGATAGTAATGACACAATTGGTGTACTCACATTCTATGTAGTAGTGTTGAATTATGTTTGGGTCATGGCCCAAGTTTCCATTAATCTGAGGTTATTATGTTCTATTGTTATCATCCATCTCCTCAGTATTATTGAAGTGTTATGATAATACCAAAACTTTATTGTTCTATCACAGTTACACAGTGAAAGAGCAAAACCTTTTACCTTCAACCAGAGCTTGTCTTTTAGCTAGTGTTAATCAGCTAGCTCACCCTGtatggagcttggaagctgacaaaagtatcttaatgttgttgttctttcagctgctcccattaggggtcgcccttcctgacgcaactcACCccatttatccaggcttgggaccagcactgagagagagCACTAGTCTGTGCACCCCAAGTGGCTGGGGTTGACGCCCAATGCAGAGCTCAAACGCACAATCCTGAGATCAAGAGTCCCATGCTCTACCAACTGAGCTAGCCAGGTGCCACAAAAGTATTTTAATGtgaatttcatatatttgtATCAGTATCAGAATACTACATACAAATCTCAAAGaatttaaatatcaaaaatacaGGATACAGCATTCAGGATTCTGAAGGAAAAGAAGACGCTTTCAGAGTGGTGAAACTCAGCATTTGCCAATCCTAGTCATCTGCCACACTCTTGTCCATGAAGTGCGTGCTAACAGTTGGCAGCAAACTAATGTTAATATAGCCTAGCTAGCTAGAACATTACCTAAATGATTATGCTGGGCTTATACTAAGCATCGAGTGTTTCACTGTAGAACACAAaaccctttttttatttgttttaccaTTCTGAAAGTGTATACTTTTCTCAGGGAAGCTCAGGTGCTTCACCTTTGGCCTAATCTGCATAATATCTGTATTTCTGAGATTTGAAATTTGTATttagtgttctttttttaaatcacaaaccataattttaaattattattgatattcGAATACATTTGTCAGCTTCTAAGCTTTGGCTCTTCTTCCTTGTTGTAACTGTGGATTCAGAGCACAGCACAAAGCCAGTGGAACAAGTTAGTTGGCTAAAACATAAGTTATTCTTGACGGAGAAAGGGTTGCTCTACTCTAATATCTCAGCATGCTGTTCTCTCAGGGTCacggtgtgtgtttatttgctcTCAGGGAGAGCATTGTGAAGAGGAAAACGCCTGCACTCTTCTAGTGTTTGTGTTCTTATCATTCATTCTGTGTTCGCTatgtatgtttttatctgatcagtgtttttttgttgtcctATCCTGTCTGTGTTGTCCAGCCTGGCTTTTAGCTAACTGCTAGCTCACTATGGGCTCTGTGTAAAGCTGGACCTATTGGAAATGGTGTAAGATGTATGTGTCTGAAAACTCCTGCCAAATCCTACAGCTCTGACTGTAAATTACTATGAATTGCTGTGAATTACAGGCTTGCCAGGGcaactcacagcagctcaggaacaaCATGTTTTGAgctatatattttcttttttcactgatttattgattttgtttttaatttcactaaaaaaaaagcatatgcaAGTCACCTCAATCCAgtttgaaaattaattttccTTATTTGATGGAACACAGAAGTAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250196 lncRNA downstream 56968 14619232 ~ 14621782 (-) False G211195
TU250195 lncRNA downstream 56968 14619774 ~ 14621782 (-) True G211195
TU250187 lncRNA downstream 84086 14588820 ~ 14594664 (-) True G211187
TU250024 lncRNA downstream 216341 14461792 ~ 14462409 (-) True G211054
TU249962 lncRNA downstream 348830 14329586 ~ 14329920 (-) True G211003
TU250303 lncRNA upstream 137103 14827235 ~ 14844312 (-) True G211269
TU250308 lncRNA upstream 157120 14847252 ~ 14847456 (-) True G211274
TU250394 lncRNA upstream 244537 14934669 ~ 14935121 (-) True G211346
TU250411 lncRNA upstream 288487 14978619 ~ 14983132 (-) True rac1b
TU250397 lncRNA upstream 310813 15000945 ~ 15001328 (-) True G211349
XM_026917053.2 mRNA downstream 213459 14463405 ~ 14465291 (-) True LOC113528481
XM_034310045.1 mRNA downstream 227155 14447240 ~ 14451595 (-) True si:dkey-282h22.5
XM_034310046.1 mRNA downstream 227202 14447240 ~ 14451548 (-) False si:dkey-282h22.5
XM_026917155.2 mRNA downstream 246030 14414913 ~ 14432720 (-) True LOC113528545
XM_034310307.1 mRNA downstream 268074 14394229 ~ 14410676 (-) False LOC113527937
XM_026916905.2 mRNA upstream 2061 14692193 ~ 14709079 (-) True LOC113528386
XM_026917075.2 mRNA upstream 42771 14732903 ~ 14738583 (-) True fscn2a
XM_034309677.1 mRNA upstream 78475 14768607 ~ 14840369 (-) False LOC113528036
XM_034309678.1 mRNA upstream 78475 14768607 ~ 14840369 (-) False LOC113528036
XM_034309676.1 mRNA upstream 78475 14768607 ~ 14840369 (-) True LOC113528036
TU250141 other downstream 157775 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 187975 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 649109 14020248 ~ 14029641 (-) False pecam1
XR_003402937.2 other downstream 672238 14004169 ~ 14006512 (-) False LOC113528401
XR_004579330.1 other downstream 1279525 13395466 ~ 13399225 (-) True LOC117598755
XR_003402969.1 other upstream 781645 15471777 ~ 15471912 (-) True LOC113528654
XR_004579443.1 other upstream 2602719 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 2602719 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 2602719 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 2602719 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile