RNA id: XM_026916993.2


Basic Information

Item Value
RNA id XM_026916993.2
length 1078
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC113528448
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12389706 ~ 12394578 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTTGCTCTCCTGGTCGAGGTGCAGCAGCTAAACGCAGCTGAAGTCAGGAAAGCCTCAGCATTAGCTCAGTGCTAATAGTGCTAATACTGAATGTAGCTACTGCAGAATTTATTTTGTTAGGAATAATTTTGTCGGAATAACAGGAATAACATTATTGTCGGAATAATGACAGAATTCAAGAGGAAATGAGGTGTTGCTGCTGGAGGCGCTCCAGGCTTTTGAGGATTAATGGAGGACTTCAAGTGGGACCCCAAGATCGCAGAGCTCTTGAATAGCAAGGTGGGAAAATATCTGAGCGACCACCCCTTCGTCACACTGGTGCTGCTTGTATTTGGTGTAACAGCCTCAGTACCTGTTGGGCTTTTCCTGGCGTTTGCCGCTGTTACGTTCATCACTGTTACTGCATACTGCATCTTTGCTGAAATTGTGCTGCTGACGATCGGAGGAGTCATCTTGCTCTGTGTTCTCTGCTGTCTTGCCGTGGTGGCCTTCTGGATCTCCTGTGTGCTAAGCGTCCTGTACATCATTGGCTCACATGTCCTCAATTACTCTGTTATTCCCAGTAGCGTACCTGAAAGGACAATCTCTGCAGGAGacatggagaaagaaaaagacctAAATGACTGAGTCTAGGCATATACAGTCTAGGCATTTATGTTGCACACCCCCATCTACATCAACATCTTTTGACCAGCAAGATTGCAAtggcaaaatatatatttgttacatgttttataatataaacaatgattttataaatatattttatatttttaatctctGAAACATGTGCAATATCTCATGTTAAATGTTACACGTTGGCACATTATTCCAGGTCAGCATTATATACCAGTGTTAACTGGTGTTTCAGAGCCCCTAAGACAACAACTGACATTCTGTGAAATGGTTGTTAGTACTCTTAGTGCCATTTGGGCAAACAGTGGATTTTAAGAGCATATATTTTTATAGGTCAGCATTTATTTGTGGGTTTCTGATGCCTTAAAGGGTTTTTTCTTCCTACAATGATCACTGTACACTTGTATTGTACTATAAAGGAAGTCTGCATATCATTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248758 lncRNA downstream 56044 12333454 ~ 12333662 (-) True G209984
TU248756 lncRNA downstream 90729 12298124 ~ 12298977 (-) False LOC113528332
TU248726 lncRNA downstream 152514 12236974 ~ 12237192 (-) True G209961
TU248715 lncRNA downstream 215299 12173454 ~ 12174407 (-) True G209951
TU248700 lncRNA downstream 230594 12158070 ~ 12159112 (-) True G209946
XR_004579344.1 lncRNA upstream 52382 12446461 ~ 12463878 (-) True LOC117598772
TU248929 lncRNA upstream 192352 12586431 ~ 12587089 (-) True G210123
TU249181 lncRNA upstream 473511 12867590 ~ 12868480 (-) True G210351
TU249178 lncRNA upstream 475173 12869252 ~ 12870186 (-) True G210349
TU249180 lncRNA upstream 527858 12921937 ~ 12923464 (-) True G210350
XM_026916147.2 mRNA downstream 8672 12375893 ~ 12381034 (-) True si:ch211-139g16.8
XM_026916835.2 mRNA downstream 15441 12371533 ~ 12374265 (-) True rps2
XM_026916828.2 mRNA downstream 25940 12356624 ~ 12363766 (-) True LOC113528330
XM_026916839.2 mRNA downstream 50443 12333854 ~ 12339263 (-) False msrb1a
XM_026916829.2 mRNA downstream 74208 12297776 ~ 12315498 (-) True LOC113528332
XM_026916906.2 mRNA upstream 132261 12526340 ~ 12530301 (-) True wfikkn2a
XM_026917235.2 mRNA upstream 143333 12537412 ~ 12543062 (-) True ankrd40
XM_026917033.2 mRNA upstream 152254 12546333 ~ 12559213 (-) False tom1
XM_026917031.2 mRNA upstream 152254 12546333 ~ 12559213 (-) False tom1
XM_034310226.1 mRNA upstream 152254 12546333 ~ 12559212 (-) False tom1
TU248759 other downstream 50437 12333858 ~ 12339269 (-) True msrb1a
TU248755 other downstream 74237 12300005 ~ 12315469 (-) False LOC113528332
XR_003402971.1 other downstream 364134 12025502 ~ 12025572 (-) True LOC113528656
XR_003402968.1 other downstream 633783 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 688605 11699906 ~ 11701101 (-) False zgc:162612
XR_004579428.1 other upstream 154750 12548829 ~ 12559213 (-) False tom1
XR_004579425.1 other upstream 154750 12548829 ~ 12559213 (-) False tom1
XR_004579426.1 other upstream 154751 12548830 ~ 12559213 (-) False tom1
XR_004579427.1 other upstream 155041 12549120 ~ 12559213 (-) False tom1
trnas-aga_12 other upstream 432379 12826458 ~ 12826539 (-) True trnas-aga_12

Expression Profile