RNA id: XM_026916997.2


Basic Information

Item Value
RNA id XM_026916997.2
length 1694
RNA type mRNA
GC content 0.39
exon number 3
gene id rcvrna
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11009287 ~ 11011550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGTCACGTAGAGCAACCCAAGAAGATTTACACATAGATCTAGTTGGGCGTTCAGCCAAAACCACCAGAGAACAGATACCAGAAAGCAAAAGCAGGAGAAAGTGGtgatttaagtttaaaatacaGCATGGGAAACAGCAAGAGCAGTGCTTTGTCCAAGGAGATTCTGGAGGATCTAAAAATGAACACCAAATACAGTGAGGCTGAACTCAGCGCCTGGTACACCACTTTCCTGAAAGAGTGTCCTAGTGGGCGCATTACTAAGGAGCAGTTTGAGGGCATCTATGCCAGCTTCTTTCCTGATGCCGACCCCACTGCTTACGCACGCCACGTTTTCCGTAGCTTTGACCTCAATGCTGATGGCACACTGGACTTTAAGGAGTACATTATTGCACTGCATTTAACCTCCTCAGGCAAAACTCTGCACAAGCTCGAGTGGGCTTTTGCTCTTTATGACGTTGATGGCAATGGAACCATCAGCAGAAATGAAGTTCAGGATATTGtgaagGCAATTTTCAATATGATTCCTGTTGAGGACCAGACAAAACTTCCAGAGGATGAGAACACACCAGAAAAGAGAGCAGACAAAATATGGAACTTTTTCCAAAAGAAAGAAGATGATAAGATCGCTGAGGGCGAGTTCATTCAGGGAGTGATGGACAACAAAGACATTTTGAGGTTGATACAGTTTGATGAGCCAAAGAAAATACAGGACAAACTGAAGGAGAAGAGGCCATAACATTCACACCACTTTCTCCTGAGACTGTGCActgctcatttcctgtttacacagcTAAACTCCTATGCCACTCTGGCACTCATTTGCTCAAGAGgaccatctgtgtgtgtgtatatgtatttgtattgtcTAAAGTTAACACAGCAGAGCCATGACCCTGCCCAACCAACTGTATTCCTACTGCACAACTATACAAGCTGCTTTGAGCCACTGTATGGCCATGCATGTCCTCCAAGTACAAATCAGATCCATTACTTAAGCATTTACCATTATTGtattattgctttatttgtttataataacAAGAATGTTAGGTATGAGAAAGCAATTAGGCTCAGGTTAGCAATCCCTCTGGTGTAATCAATCCTCTTAAAATCTGAAGGTCAATCCAGGCAAACCCTCATGAGACAGTGGCAGTTTTAATTTTGGCAGCTAATTTGATTTTCTAttgacaaaaccaaaaacactttTAATCGTATTTAGTAATTTGTTTTTTGCTAGATTTAATTTATGAAAAactacaattttaaataattcagccaatgaaaaaaaattttctcagtttttcccatttttccccaaatgtcAGTTTTAGGTTTTCCAAAAGGTATATGCattaatttctcatttcttaagCATCAGATTGTATTCATGCACCAATCAGAAGAGCCATTTACAGTGCAGTGTGCATGACCACATATGCCCTCTAACCATGTGTATCAATTAATTTTCATGTTCAACCACATTTGGTGGTGTTGGAGTCGGGGATTACCCTTTGTCCAATCGACCATTACTgacatttttgtcttgtttttatttgctgAGAAAAATGTCCTCACATTTTGTCTTAGATTTTGAATACAATGGAAGATATTGATTTAgataatgtttctttttcatcatgGAAAaaattgacaaagttattgacAAAGTTGTTCTGTCAACAAAATGAAC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K13764 RCVRN; recoverin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247589 lncRNA downstream 375137 10633535 ~ 10634150 (-) True G208998
TU247571 lncRNA downstream 490340 10518342 ~ 10518947 (-) True G208980
TU247554 lncRNA downstream 558747 10447736 ~ 10450540 (-) True G208964
TU247529 lncRNA downstream 667065 10341911 ~ 10342222 (-) True G208951
TU247314 lncRNA downstream 718402 10221710 ~ 10290885 (-) True G208771
TU247803 lncRNA upstream 77463 11089013 ~ 11144984 (-) True G209189
XR_003402938.2 lncRNA upstream 207109 11218659 ~ 11221378 (-) True LOC113528410
TU248077 lncRNA upstream 207118 11218668 ~ 11221366 (-) False LOC113528410
TU248181 lncRNA upstream 377410 11388960 ~ 11389231 (-) True G209529
TU248190 lncRNA upstream 389172 11400722 ~ 11401423 (-) True G209538
XM_026916800.2 mRNA downstream 46447 10943238 ~ 10962840 (-) True tbl3
XM_026916143.2 mRNA downstream 110747 10872034 ~ 10898540 (-) False LOC113527942
XM_026916142.2 mRNA downstream 110747 10872034 ~ 10898540 (-) False LOC113527942
XM_026916141.2 mRNA downstream 110747 10872034 ~ 10898540 (-) True LOC113527942
XM_026916281.2 mRNA downstream 140203 10847701 ~ 10869084 (-) False srebf1
XM_034309798.1 mRNA upstream 12122 11023672 ~ 11025804 (-) True LOC113528015
XM_034309799.1 mRNA upstream 12122 11023672 ~ 11025804 (-) False LOC113528015
XM_034310022.1 mRNA upstream 62967 11074517 ~ 11145832 (-) True baiap2a
XM_026916572.2 mRNA upstream 62967 11074517 ~ 11145831 (-) False baiap2a
XM_026916568.2 mRNA upstream 62967 11074517 ~ 11145830 (-) False baiap2a
XR_003402902.2 other downstream 538769 10451496 ~ 10470518 (-) False tecpr1b
trnac-gca_22 other downstream 624167 10385049 ~ 10385120 (-) True trnac-gca_22
XR_004579397.1 other downstream 1278037 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 1534809 9466480 ~ 9474478 (-) False copz2
TU246804 other downstream 1589703 9413601 ~ 9419584 (-) True prr15la
XR_003402978.2 other upstream 420960 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 525010 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 554460 11566010 ~ 11566128 (-) True LOC113528658
TU248329 other upstream 688356 11699906 ~ 11701101 (-) False zgc:162612
XR_003402968.1 other upstream 744275 11755825 ~ 11755923 (-) True LOC113528652

Expression Profile