RNA id: XM_026917009.2



Basic Information


Item Value
RNA id XM_026917009.2
length 1662
RNA type mRNA
GC content 0.43
exon number 2
gene id swsap1
representative True

Chromosome Information


Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13432227 ~ 13435356 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GCTGAGCGGAAATACGAAAACACCTTTAAaggaagtggattttttttgtgcagaatATGAAATAATACAGTTCACACACGAACATGTTGGTGTTAATTGTTTGAGTTGtttttattatgatattaatatCGAAACTACATAAAACACCAATAACGCAAATAGATGACGTTGAAAAGCAGCGACACACCGCAGTGCATTGACACATTGACTATCCAATCGAAATAAAGAGAGTCCTTTTAACTGTCCAATCACAGTGAGGTGGGCGGTGCCCTCTCAGTTCGCGGGGGAAACAAGTACCAAACTTAGCTTGCTATAGCGTCAGGTTGTACCTTTCTGAAAACTGGCACACTGGCTTATTATCTCCTGTGGTCACAATAACCTATATATATTTGTGAAGTAAGCATGGTTGACATATTGAGTGTCGTTTTCCGACGGTTTGGTTCACAGCTACACGCATCAGGTGATATAAAACTCTCTTCTCACCCGGAGAGCAGCACTTTGGTGCTTGGGGATGAAAACATCAACAGGTCGCTGTTACTCCTGAcagctataacagcagcttcaGAAATGGGATACAAAGTGCTGTTTTTCACACCAAATCAAATTCAGAGCCTTCCAGTGACTGTGCAGGATTCATCCGTATCTCTGAAGCCTGACAGTCTGAAGAAAATCAGGTTCGTGTATCCCAAGACATtggaggagctgctggaggacGTGGCGTCCCTTCATGAGCTGGTGCCTGAGACTGCACCGCTTCCTTCCTTGTTAATTGTAGATGGAGTGGAGCGGTATGTGCGTGTTCAGGACAGGCCACAGCAAGATTCTCAGAGCACAGCTGCTCACATCGTAGCCCTCCTGCACGACACGGCTGCCTTCCTCAAGGCCAGAAGTGAGAAAAGCCAACAACCTCCATGCAGGGTCATTGTCTCTTATCAGCCTGAGTGGGAAGGACGAGGAGGTGACATGTTTGCCCCGGATTCCATCCTCTTAGTCCTGGAGCGCTATCTGCAGGTGAGGTGCAACTTACACAAAGTGATAAATAGCGGAGAAGCGCAGAACGAGTGGCTGCTGTATCTCTCGGGTCCAGGACTGCAAGTTGATGGGTATGGTAATGGAGAGAAATGTCTGGGATTGCAGTGGCGTGTGGTCATGCAGCCTAATGGGGCACTGGAGTTCAGGCCAGAAAGTGCACAAAAAGAGGAGACCTTACAGGTACAACATTCTGATTGTGGAAATGAAGCATGAATAGTCACAGAGTTTATTggactttattttaataaatatacttgAAGAAAAAAGACTTCTGTGCTGCACACTCAGACACAATGTAACAAACAAATCcttgtaaattgtaaaaataaaatgtacattttcatgGTTTTACAATGAACCATCCTCTTGTGCTGAGATAAAGTTTTCAGTCAGTTAGGATTCAACTGGTTGTCCAGAAAACACAGGCTACAGCTGGGAGATATGATGATGTGATAAGTTGTCACAatgtgcttttctgagatattgtggataacatgatatctttttatgcatgtatatattttttaagtcatttttgtTACAGACTGGCTGGAAGCAGAGGATGGTTTGTTCAAATTctgtacttaatctttaaagttgtaaattgttaaataaagataataatactTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU249504 lncRNA downstream 26870 13405139 ~ 13405357 (-) True G210607
TU249469 lncRNA downstream 36817 13390616 ~ 13395410 (-) False elof1
XR_003402958.2 lncRNA downstream 59289 13369454 ~ 13372938 (-) True LOC113528601
TU249463 lncRNA downstream 77642 13310533 ~ 13354585 (-) True G210570
TU249332 lncRNA downstream 260161 13171841 ~ 13172066 (-) True G210461
TU249543 lncRNA upstream 10380 13445736 ~ 13446438 (-) True G210640
XR_003402926.2 lncRNA upstream 28183 13463539 ~ 13475462 (-) True LOC113528343
TU249602 lncRNA upstream 90025 13525381 ~ 13525580 (-) True G210690
TU249799 lncRNA upstream 156083 13591439 ~ 13637837 (-) False G210858
TU249798 lncRNA upstream 193437 13628793 ~ 13660814 (-) True G210858
XM_026916221.2 mRNA downstream 36770 13390616 ~ 13395457 (-) True elof1
XM_026917193.2 mRNA downstream 164053 13241850 ~ 13268174 (-) True LOC113528569
XM_026917090.2 mRNA downstream 205352 13223244 ~ 13226875 (-) True nfil3-6
XM_026916922.2 mRNA downstream 212205 13210369 ~ 13220022 (-) False nfil3-2
XM_026916923.2 mRNA downstream 213154 13210369 ~ 13219073 (-) True nfil3-2
XM_026916843.2 mRNA upstream 59630 13494986 ~ 13498163 (-) True gadd45gip1
XM_026916077.2 mRNA upstream 226807 13662163 ~ 13669491 (-) True nme4
XM_026916672.2 mRNA upstream 235553 13670909 ~ 13695259 (-) True xpo6
XM_034309975.1 mRNA upstream 261257 13696613 ~ 13702527 (-) False antkmt
XM_026916113.2 mRNA upstream 261257 13696613 ~ 13702171 (-) False antkmt
XR_004579330.1 other downstream 33002 13395466 ~ 13399225 (-) True LOC117598755
trnas-aga_12 other downstream 605688 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579428.1 other downstream 873014 12548829 ~ 12559213 (-) False tom1
XR_003402937.2 other upstream 568813 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 584892 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 1052465 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 1084921 14520277 ~ 14520975 (-) True G211151
XR_004579411.1 other upstream 1243394 14678750 ~ 14690132 (-) False LOC113528445

Expression Profile