RNA id: XM_026917014.2


Basic Information

Item Value
RNA id XM_026917014.2
length 7206
RNA type mRNA
GC content 0.52
exon number 24
gene id arhgap23a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6026279 ~ 6105884 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCAGATTTGAGCCTAGGAGTGAGTCTCGTCATGCCTGCTGAGATCTGAGCTGTGGAGCTGCGGGGTTACAGCGCGGGGGAGGAGGGAGGGACAGACACGAGCGCCAACAAACCAAACAACGGAAAAGTGCGGAGCGGGACGGAAACCGGAGAGCTGAATGCCGACCTGCACACTTGGCAGTTGTTGCGGTTTAACATTAACGCGGTGGAGTTTGCATACCGCGCCTTCTCAGCTTCACAGAGCCTCCCGGAGTCCAGCTGTCCAATGAATGGAGTGGCGTTTTGTCTGGTTGGGATTCCGCCGTGTTCAGAAAGCGAAGCAAAGGGGCGAAGAGATGGGATCTCGTCATCCAGTGATAACCCTCGGCCAGTCCTGGGGGGAGGAGCTGAAGGCAGGGGTGTGTCCTGGCAGGGCCCGCGGACACTGGTGCTCCATAAGAACTCTCAGGGCTTCGGATTCACACTGCGGCACTTCATTGTATACCCCCCTGAGTCAGCCTTGCACACTAGCCTCAAGGATGATGAAAATGGAAACGGAAAGGGTCTACAGCGAAGTCGGCTGGAACCAATGGACACCATATTTGTGAAGAATGTGAGGGAGAAAGGCCCTGCTCACCAGGCTGGTTTGTGTACaggtGACAGATTAGTAAAGGTGAATGGGGAGAGTGTGTTGGGTAAGACATACTCCCAGGTGATAGCACTAATTCAAAACAGTGAGAGTGTGTTGGAGCTCTCCATAATGCCAAAGGATGAGGATGTACTGCAGCTGGCGTACTCTCATGATGCCTACCTGAAAGGGAACACGCCATTTACAGGAGGGGCCCAAAATCTTCCTACACCGCCCCCTCTGTGCTACCCACCACGTTCCCAGCCTCATCCAAGCCACACTCCCTGCCCCGCCCCTTCTCGGTCCCCCCACATGGGACAGAACCAGCTGGACAATTGGAGCCGCTGGCCCGGCTCTGCATCCAGCCCATCCCCACCACTTGACAACCGGACAAGTGTACCTACCACCACCAGTATGGCCTGGGCATCAGAGGGCCGTGAACCAGGGGGTGTCAGCCACAGCAGCCCTGCCCATCGCACAGAGGAAATCCGGTATGGTATGACTGAAAGAGGACGTTCATTCTCTTCCTCAACTTCCACAAGTCCACCGCACCACACTCACCATGGGAACAACAGCAAGGACAACTTGTCATGGGGCAGCCCGCCAAAACCTGCATCAGTGTCAAGTTCATGCCGCAGCGAACGCACCCAACAAGCCCTCACTAACTGGTACTACAACCAGGTGTCAGAACGGGAGCGGGAACGCTCAACTGTCCGCTCTCTACACCAGCGACAACGCAGTTTCTCTCAGGACCGTCTGGGAGAGCTAAGCCGAAGCAGACGGACACATAGGACTGATTTTCCCCAGAGCGCCTCTCATGACACGTTGCTGCACCAAGGGCAGCATCCTCATTGGATGCAGGTAATGCCTTCTGCCTGCCAGAACCGTTCTCGCTCCGAGAACCTTCTCCGCAGTCGCTACGGGCACTCGGGTCGCTCATTAGAGGCTCTAGACCAGGTACTTTGCCCGCTCTCGCCACACCGCGAGAGACAAGCCTGGCAGCAACAGCCCCAGAGGCAGGGAAGCCATTTTAGCTCGGCACAGACGCCACCTAGTGCCCGTCGTGTGCAAGTTCATCGCCAACACCAATCCCAATCTTCAGAGCAGCACCGTTGTCAGCAACACTCACCCCAACAGCACCAACACCCCCCAAAGCATCAAAATCAAATGCATTCATCACAACATCCACCACAGAGCCGCCGTTTGACCTCGTGCCAGAGTGTGGACCAGGAGCAGATTGGCTACCGCAGCTACAGTCCCTCTTTCAACCGCAAGAGTGGACGAATCCTGCAGCATGCCCAGTCGTTCCGGGACCCGTCCTACACGGGCCCACGCCTCAGCTGGACCAGTCTTCCAGAGGGCATGGCTCCATCTCCTGCTCCATCACCTGCCCCTCCTACTTGTTCAGTGTCTGGTGAAGGACAGGATGGAACTCATCGTCCGACTAACCATGAAAGAGAGGGCGGGGAGACAGAGCTGGAGATCCAAGCGCAGGTCCAAGAGGTGGTGCTAAGACAAAAGCCACCCATGGGCCGAAGGGCTGGCCATGTCCACCGACTCCCCCTGGCACTTGATGGCAGTGACCCTCTACTTTTCACCTCGGACCCTGAAGAAGCCCTGCTCAAGTCAGAGGGTTCTTCCTCCCAACGGCGTGCAAACGGTAATCTAGCACCGCTCTCTGTGGAGGATGACTCGCTGGCCTCTATCCCCTTCATTGATGAGCCAACCAGCCCGAGCGCAGATCTGCGGGCGTGTCACGTCCCCGCCTCGTCCGTCGTGTCCAGTGGCGGCCTTAAGTCCGCCTCCGCTGTGGGGACCAGCCCCGCCTCCCCAACCTTCACCTTCCCCCTCAGCCGCCTCTCTTCCCATGACTGCAGCAGCATCAAATCCAGTCGCCGCTCTTCCTATCTGTTGGCCATCACCACCGAGCGCTCCAAGTCATGTGACGAGGGACTCCACACTCTCAGAGACGATGGGCGGGTCTTCTCgAGGTTGCCAAAGAGAGTTAAAAGCTTCTTCGGTGATGGGtccctGGACAGCTTGACGGTGGCTGACGAGGCTCGCTCTAAACGTCACTCTGCCTCGGAGCTGGGCAGCATCAGCTACAGTGACGTGAGGAAAGAAGGATGGCTGCACTACAAACAAATCCACACTGAGAAGGGCAAGAAGGTGGGCAGTGCCATTCGTCCCTGGAGGCGGGTCTTCTCAGTGTTGCGCTTCGGTGCACTCTACCTCTACAAAGACAAACGGGAGGCGCTGCTGAAAGGTGCCGCCCTGGGAGGCGGATCCGAAGACGAGCAACCAATCAGACTCCGCGGCTGCCTGGTAGACATTGCGTACAGCGAGACGAAGCGCAAGAATGCGCTGCGACTGACCACGCAGGACTTCTGCGAGTACCTGCTGCAGGCTGAGGACCGAGACGACATGCTGGAGTGGATCAGAGTGATCCGGGAAAGCAGCAAGACTGACAGCGAgGAGTTGGGTTTCACTCGACAagctctcatcaacaagaaaCTGAATGACTACAGGAAGCAGAGTCCGACAGGTAATAAGCCTGACTCATCTCCCCGAGTGCCACGCATGACCTTCTTGCTCACCAAGGCTGACACCAGCAGTGCGCCCCCACGCTCGCCCAAACACGAACCCAAAGAGGAGAGCAGTCCTCCCAAGTCTCCATGGGGCATCAACTTCATGAAGAAAGCGAAGAAGGCGGACCCGAAAGCGTTTGGAGTCCGGCTGGAGGATTGCCAACCCGCCTGCAATAACAAGtttgttCCCCTGATTGTTGAGATCTGCTGTGGCTTGGTGGAGGAGATGGGTCTGGAGTATACAGGAATCTACAGAGTGCCAGGTAACAACGCTGTGGTGTCCAGCCTGCAGGATCAACTCAACAAGGGCAGTGACATTAACACTACAGAggagCGGTGGCAGGACCTGAACGTGGTGAGCAGCCTGCTCAAATCTTTCTTCCGCAAGCTTCCGGAGCCCCTCTTTACTGATGACAAGTACAATGACTTCATCGATGCCAATCGTATGGAGAATCCAAGTGACAGGTTGAAGACCTTGAAGAAACTGATCCATGATTTGCCAGATCATTACTTCCACACTCTGAAGTTTCTAATTGGTCATCTGAAGACTGTAGCCAATCACTCGGAGAAGAATAAGatGGAGCCTCGTAACTTGGCACTAGTGTTTGGACCCACTCTCGTGAGAACATCGGAGGACAACATGACAGACATGGTCACCCACATGCCTGACCGCTACAAGATCGTCGAGACTCTCATCCAACATTATGCCTGGTTCTTCagtgaggaacatgacaaggaTGAAAAGACACCAGTGGACACAGAGGAAGTTCAACCTGCCCCCAACATAGACCACCTCTTATCGAACATTGGCCGAGCTGGGCTCCTGGGCGAGATCTCAGACTCAACCAACAGTGATTCAGCAAAATCAAAGGGCTCGGGAGGATCGAAACGTGACCTCACAGCCAAGGACTTCCTGACGACGCTGGCCATCATGTCTGCTGTGACTCGAAGGCGCAGAAAACGACCTGTTGCCCGCCTCCTGGGCAGCAGCACTGACGACGACTCCGAACAGGAGCCAATCAGAGCCGATCTCACTGTggagggagagggggagggaAAGGAGACGGAGCGGTGTGAATCTGACACGGCTCCGCGTGCAGAGgcagaagaagatgaagatgaggaagaggaagaagatgatgaagagaATGTGGAAGTGACTATGGCCTCGCCAGGCAAGGACAAACCCGGAATGCCTTGTGAGGAAGAAGCGCACTCAGTGATCCTCAGTGAAGAAGAGGACCAGAGGTTGGAGACGAAAGGTCGCGGCTGGAGAGGGGATGATGCACGTTCTATTGTCTCGGGTTACTCCACTCTCTCTACGCTGGGGCGGAGTTTAGCATCCGAAGGCCGGGGTGACGACGCAGATGATGAGCAGAGCGAGCTGGTGAGCGAGACGGACAATGAAAGCGGCTTTGCCTCACGCTCTCTCACTCAGGAGCGTCCTGAGAAACGCACACCACCTCcatcaaatacacacacctcaccagAACCGACTGCACCGCGCAGCTTCCTGTACACGCACTGCAAACCCTCCATACCTACTCCTACTCCTGCTCCCACTTCCATTCCAGCTCCTCCACCCGCCCCTTCCAAACGCCCCACCCCTGAGCCTGTAGAAAAAGGAACTGAAAGTGCAGCACGCTCCTCCACTCCCTCCACTTCCTCTTCCACTGCCTCCCAGCGCCTCCAAAACCGACCCTCCTTCAACTCCCATCGCCTCATTCAGTGTGACACTTTAGCGCGCCGGCGCCTAAAAGCAGAAAAGGCCAAAGCTCGTTCACTAGATCCTTTAGAAGTCTGTAGTGCTTCACCCACCGAGGATGAACAGCAGGCCAACAAAGGGCGAACGAGAACCAGCCTTCCTGAATCCTCCCCTTCTCACTCACCCAAACTGACCCCATCCAGTGGTCACCTGttagctctgccccctgccctGGGCTCCACCTCTGGCTCCGGAAGTCAGGCATCACTGGCAGAGCAGGTGCGTGCACGTCTGCTTGGTTCAGTGGAGGACATGCGTTCTGTAGGGCTGAGGAAACCTCTTTCGCCTGAGACGCGCCGGCGGAGGCGGGCCTGGAGGAGACACACAGTGGTGGTCTCGTCTACGGACTCCTCCCGCAAAAGCACTCAAGTCTCCTCTGCcgttaacaacaacaacaaaccccCGGCCCCGCCCCCCAAACCTTTCGTTTTAATCCGACGTCCTGGGGAAAAGCCCATCCTCGTTCCCCAGCGCTCCGCAGCCGACGCCCCTTCATCACACCGGGCCCCGCCTACCTCCCAGTTCCACGAATGCTTGTGACAGGAGTAATCGGATTCTTtaggagtgtgtatgtggaggTTTCACACCAATACCCCATTTTCCATTAACATGGTGCTTGTTCTGGGAGTCtgggaaccttttttttttacatttccacTGGTATAAGAgctaatatttatacattttaccaTCCAGAGTCTGTGAAGAGAGCACAGGGGCATCATCACAGACCATGATTACACCCAAGACAACTTACCTTTAGCAACATAGTCTGATTGCGCAACTTTTTAGCAGCAGTTTTGCTAGCATTAGCTGTAGCAATGTGGCTACTATTTAGTTATTTGTAATTTCCAGTGAAAACCACTGAGGCAGCCACAtatatcatttttcaaaaatccCTCTGTTCATGTCTTGTTTTAAAGGTGGCCATGGGTTGTTGTTATGGCAATGAAATGGCGCCAACCCAAAGCCCCAAAATTGCCCATTTTCGGTTCCAGACAAGTAGCATTATAGTGCTGGAACCACACCAATTTCCCAAACTCTTCTGAGATTATACACCCACTTGATTATGCACCTAGTTGGTGGAAGAGGGGTATCAATGAACGGGTTCGCTAactgtgtgtttcctttttcctcattcATAGCTGCTCTGCTTGCATGGCACAGGGCTTCTTTTAAACGTTGCCAaagtttttattctctctctttcattccttTTAGTGCTCTTTTAACACAGTGTTACAAAAGGGCCAGAGAGCAGCGGGGTCTCTACATGACATTTTAAAGAACTGCCAGGGTTCTtgccacacactcacactggagTCGTTGTGTGTTTCGGTGCTTCACTGTGTTCTCCCTTAAGATGTGTCCCCATTCTCTCACTGTGTCCAATGGAGGGAATGCCAAATTAAAATTCACCCAATTGTAccgtttctttttcttttcaccatGACGATGCTGCCTCATCACAGATCCTGGGACAATGATAAATGGTACACAAActtttacacaaatacacacattctttcATCCACTCAGCTATAGACTTCAGCAGAGTATTAATGCAGTATTAGCGAGGCAGTGTTTGCCGACGTCAGATGTGTTGAaactgacctttgacccctaaCTTCGCTCATGTCCCTTTCATGTTACTTTGAGAAACCACAAGACAAATTGTGGTGTGttcaaaactcacacacacacacacacacacagctcattcTAAGCATTTCTTCATCTGTGTACGTTTGTGTGTCTGAAATTgtttgtgtatagtgtgtatgtgcgtTCAGCtattttgtaacatttgtaCAAAGCCTTGCTAAGTTAATCTTGTAAATATGCATATAAtatcatatttgtttttctttttttttttttatatggttTACAAATGTGCACATCAGTGCACAATCATTTCTTTTAAGATTTTACTTGAAATGGTTTCTttactgtttctttttgttttgtatacagtatataaaaaatctatattatatattttgtatgaaTATAATAAGTACTTTTGTTTGGggtgttatttgttttaaacaaaacaaacagaactaAACCTCCGATAGACtgttgtttatttcttcatAAATGGCCTTTTCTCTGTGACTTACAAGTACTATGCAGAACTCCATACACCTCAGTGCAAAGAAAAGAACTTTAACCTGCAGAAGAGTGTCTGTCCAACGGCCTGTCACATGCTATAATAAATTCCTTATTGCTGGGCATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402949.2 lncRNA downstream 72775 5952798 ~ 5953504 (-) True LOC113528476
TU244141 lncRNA downstream 298599 5721634 ~ 5727680 (-) True G206210
TU244080 lncRNA downstream 394360 5631715 ~ 5631919 (-) True G206164
XR_003402932.2 lncRNA downstream 741374 5280730 ~ 5284905 (-) True LOC113528378
TU243539 lncRNA downstream 934357 5089336 ~ 5091922 (-) False G205633
XR_003402891.2 lncRNA upstream 96344 6187474 ~ 6189926 (-) True LOC113527891
TU244662 lncRNA upstream 112182 6203312 ~ 6204196 (-) True G206628
TU244696 lncRNA upstream 182686 6273816 ~ 6346363 (-) True G206649
TU244981 lncRNA upstream 554967 6646097 ~ 6647814 (-) False stat5a
TU245006 lncRNA upstream 733766 6824896 ~ 6825760 (-) True G206924
XM_026916955.2 mRNA downstream 8292 5981200 ~ 6017987 (-) True plcd3a
XM_026917240.2 mRNA downstream 47906 5962688 ~ 5978373 (-) True nmt1a
XM_026917153.2 mRNA downstream 65229 5955746 ~ 5961050 (-) False LOC113528542
XM_026916772.2 mRNA downstream 75282 5940866 ~ 5950997 (-) True retsat
XM_034309809.1 mRNA downstream 87865 5934040 ~ 5938414 (-) False cdk21
XM_034309895.1 mRNA upstream 58225 6149355 ~ 6160172 (-) True nudt9
XM_026916165.2 mRNA upstream 58225 6149355 ~ 6156849 (-) False nudt9
XM_026916518.2 mRNA upstream 132340 6223470 ~ 6238688 (-) True atp2a1
XM_026916256.2 mRNA upstream 157652 6248782 ~ 6251486 (-) True hsp70.3
XM_026916749.2 mRNA upstream 186086 6277216 ~ 6303481 (-) False aclya
XR_004579347.1 other downstream 65229 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 65229 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 75282 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 184802 5841137 ~ 5841477 (-) True G206282
TU244177 other downstream 269546 5754767 ~ 5756733 (-) True G206236
TU244626 other upstream 35780 6126910 ~ 6194996 (-) True G206604
trnac-gca_16 other upstream 1179776 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 1181125 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 1181927 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 1183176 7274306 ~ 7274377 (-) True trnac-gca_20

Expression Profile