RNA id: XM_026917024.2


Basic Information

Item Value
RNA id XM_026917024.2
length 1708
RNA type mRNA
GC content 0.39
exon number 10
gene id copz2
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9464331 ~ 9474478 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCAGGGTTGGATTTAGCCATTTTGGCGGATTTGCTCCACCCCCTGTATGAGTCAGAGGTTTTTACGAGCGCTCCAGTAGTGACAGCTCAAAGCTGTCCACGTCAACACTAAACACCACCATGGACTCCGTGGCTCTGGAGCCTTCGCTGTACACAGTTAAGGCAGTCTTCATCTTGGATAATGACGGAAACCGACTTCTTTCGAAGTACTATGACACAGAGCTGTATCCCTCTATGAAGGAGCAGAAAAATTTCGAGAAGAACGTCTTCAACAAAACACATAAAGCAGACAATGAAATAGCCTTCCTGGAGGGCATGACTATAGTGTACAAGAGCAGCATAGACCTGTTCTTCTATGTGGTGGGCAGTGCACAGGAGAATGAGCTGATGTTGATGGCGGTGTTGAACTGTTTGTTTGAGTCTCTCAATCAAATCTTGAGGAAAAATGTGGAGAAAAGATGTCTGCTGGATAATCTGGATGGAGTGTTTCTGGTGGTGGATGAGATCATTGATGGAGGGGTGATCCTGGAGAGCGACCCGCAGCAGGTAGTCGAGAAGGTCAACTACAGGACTGATGACAGCCCTCTATCAGAACACAGTGTGGCTCAGCATATCACTGAGAAACTGGCTATCACCACTAATgtGTTACAGACTGCAAAAGAACAGATCAAGTGGTCAATACTGAAATAATCTTCTTCACAGTGAGCGGATCTGTAAATAATCTGAAGTGATTTGGGAAATATTGTAGccattcagctttattttttctgaAATCCACTAGGCTAATTAATTATGATACTAGCTGTAGGTTCAGCTGTTTTTATCCTTAAGCCATTCAGGCTTGAATGCTTTATTAAACAGGTTATACTGTGCATAAAACTAAGAAGAAGGGTCATTTTCCACACGCTTTGAGTTTGATGGCTGTTATTCAAGAAGCTCCTTGTATTTAGTAATGTGGACAGTAAGGATCGACCTGATTTGCACTGAATATTTTCAGCATGTGCCCCAGATGCTAGAGTTTTTTGTTGAAAGTGTTCTGTAAAAAGGAATAATCAAAATTGTTTGTCTGAttcaattttgtatttattgttttaagaCTAAATATGCGATAACAATTGTAGCACACTTCTGACAGTTGTAGCCAAACACATTTGGggtattatttgttatttgaaaCTTTTATCAGTACAACCTTATTAATGCACCACAAATCTTAGTTTCTAGATCTGTTTGTCCTGATAACATCTGCTTTAAAACTGAGATAGGAGCAAGTGGCTTTGCTACATTGGGTTACTTCTGTAAATGATGTTACATTGGGCCTATTATCAGGCCCTTCACTATCCAAATACTATTTTTGACTAAAAATTAAGTCTTGTTCAGAAGCCAAAGAGTAAATATAAAGGCAAATTTGTATGTTACTGAAGAAATTGTAAGAACGTTATATTCATGCCCTGTCTTAATTATTAGTCACATTTATTTAAGCTATGTCTAACGAAAACTTTAATAAGATAAGTGTAATCATAAGTGTGTTTTCTGACTTGTAGCCCTGCTGCAGGTAACAGAGCTACATTTTATTATGACTTGGGTAGTCCctagttgtttttattttggtagGAATGGTGTAATGAGTGATCTTTTATTTCAGAAACACTTAACCGGATGTGGAAATTGTCTCTGGATGTTAATAAATCTCCTTTTGATAAGACA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20472 COPZ, RET3; coatomer subunit zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579419.1 lncRNA downstream 18227 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA downstream 18281 9441986 ~ 9446050 (-) True LOC117598997
TU246658 lncRNA downstream 340450 9122196 ~ 9123881 (-) False LOC113527952
TU246570 lncRNA downstream 361205 9102911 ~ 9103126 (-) True G208189
TU246536 lncRNA downstream 400824 9061580 ~ 9063507 (-) True G208158
TU246838 lncRNA upstream 20145 9494623 ~ 9505750 (-) True G208391
TU246919 lncRNA upstream 255391 9729869 ~ 9731447 (-) False hoxb8a
TU246954 lncRNA upstream 272018 9746496 ~ 9748039 (-) True G208473
XR_004579453.1 lncRNA upstream 355149 9829627 ~ 9844421 (-) False LOC117599011
XR_004579454.1 lncRNA upstream 355149 9829627 ~ 9843423 (-) False LOC117599011
XM_026916595.1 mRNA downstream 49302 9414691 ~ 9415029 (-) False prr15la
XM_034310057.1 mRNA downstream 51721 9401685 ~ 9412610 (-) True LOC113528600
XM_026917248.2 mRNA downstream 55670 9401685 ~ 9408661 (-) False LOC113528600
XM_034309943.1 mRNA downstream 72971 9380674 ~ 9391360 (-) True adsl
XM_034309695.1 mRNA upstream 15870 9490348 ~ 9501580 (-) True cbx1a
XM_026916348.2 mRNA upstream 15870 9490348 ~ 9501577 (-) False cbx1a
XM_026916891.2 mRNA upstream 179965 9654443 ~ 9658406 (-) True hoxb1a
XM_026916890.2 mRNA upstream 179965 9654443 ~ 9656978 (-) False hoxb1a
XM_026917239.2 mRNA upstream 195131 9669609 ~ 9673077 (-) True hoxb2a
TU246802 other downstream 44747 9409804 ~ 9419584 (-) False prr15la
TU246803 other downstream 44747 9409804 ~ 9419584 (-) False prr15la
TU246806 other downstream 44747 9409804 ~ 9419584 (-) False prr15la
TU246804 other downstream 44747 9413601 ~ 9419584 (-) True prr15la
TU246678 other downstream 260691 9196496 ~ 9203640 (-) True dnal4a
XR_004579397.1 other upstream 256364 9730842 ~ 9731250 (-) False hoxb8a
trnac-gca_22 other upstream 910571 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 977018 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1958032 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 2062082 11536560 ~ 11536678 (-) True LOC113528647

Expression Profile