RNA id: XM_026917030.2


Basic Information

Item Value
RNA id XM_026917030.2
length 3969
RNA type mRNA
GC content 0.39
exon number 16
gene id tom1
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12546333 ~ 12559213 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGACGTAGCCTCGCTGACTTTCCAGTTCGCCGGGTAAACCCCTTTCAGAAACAGgagtgtttgtttgggtttttttattttttttttcggtgTCGTCAGGTATCCTTCAAAAATCCGATACTGACAGACAAGATGGAGTTTTTAACAGGAAACCCTTTTTGTACACCTGTAGGCCAGCGAATAGaatatGCTACAAGTTTGCAGTCAGAAGACTGGGGACTCAATATGGAGATCTGCGACATCATCTGTGAGACAGAAGATGGCCCTAAAGATGCAGTCAGAGCAATAAAAAAGAGGATTGTGGGGAATAAGAATTTTAAAGAGGTCATGCTGGCATTAACAGTTCTGGAGGCCTGTGTGAAAAACTGTGGCTACAGGTTCCATGTCCTAGTGTCTACCAGAGAGTTTGTAGAAGGGGTTTTGGTCCGAACTATTTTACCTAGAAATGATCCTCCTTTGGTTGTTCATGACAGAATACTGACTATTATACAGgCCTGGGCTGATGCATTCCGTAGTTCTCCAGATTTAACTGgtgtagtttgtgtgtatgaagaTCTCAGGAGGAAAGGAATTAAGTTTCCAGTGGCTGAGTTGTGTAGCCCAATACACACCCCCAGCAAGcGTTTTTTTCCTGCAACTGGAGGTGAGGCTCCTCTCTCACCCACACACCAAGCTCAGACCCAACAGCAGACATCCCCCTGGCAAAACACAGAGGGTCCAATCACTTTATCACCTGACCAGGTGAAAAAGTTGATGTCTGACCTGGAAACAGTTCATAGTAACCTTAAGGTGATGTCAGAAATAATGAGTCAGATGGATCCTGGGTGCATTCAACAGTCAGATGCAGAGCTCCTGAAGCAGTTGTACTCCACATGTAAGGAGATGCAGGACCAAATAGTTCATCTTATTCCCAGAGTAACTGACGAGAAGCTGGTAGAGCAGCTGCTGGCTGCTAATGATGACATGAACACAGCCTTCACACAATATCACAGTTTTGAGAAACGTCTCAACAGGCAGAATTCTGAACAGTCGGGTGCCGACCTCATTGACCTGGAAGCTCCCTGTAAGCCACGAAGCCAATCACAAGTGGAAGCTCCGGTGTGTGAGCCAATCAGCCAAACAGTCAGCAGTCTATCAAGTCACATGGGTCGCCTGAGCACAAAGGAGAAGGATGATATTCAGAGCAAAAACTACTCTTCAGGGAATCTTCAAGATGGggACAGCCAGGAAAGCTCTGCACTGGATGAACTCGCAGCAGGAAGCAGTCAGGTACACAATGCTGGAGGGGATGACCGCCCAGACTCCACCCTCCTTGGCTCTTCACCTCAGTTTTATTGGATGATGGAAAAGGGAATGATTCCTGTCAATCAAAGTGAAGTGATGGACAATATTGAGCAGTGGCTTGATATGGATGATGATGATGACTTGGGAGATGAGGGTGTCACTAGTGAAGAGTTTGATAAGTTTTTGGCAGGCAGAGCAAAAGCAGCCGATCGTCTTCCATCCGTTAAACCTTCATCTAATGACCGCATGCCCTCACAACCATAGTTCTCTACAGAAGCACAATCATCCACCTTAATATCAACGATCTGTAGCATAAAGTGGATTGGTTTGTGCCATTATGCTTTATGTAAGGggaattatattttatttatgtggtGCTGTATCATCTGTCCTTCTTGCACATTTATAAACTATAGGGTTATGTCATTGTTATAATCtagtttttactgtatttttttttttaacaagggtACTGTGTAGTGTATAACATGAATTTGAAATGTTCCACTGACTGGTTTTAGGTTTGTGGCACTGATTTAATGTCATTCTCAATTTCACCAAGCTATTAGGTGTTTTATCTTATACAAGGAGTGGAATTATGGCTATCCTTGATTTGGGCATGAAAGATGCCCAAAGGTTTTGTGGTCCTTTTGGTGACAGAACAGAACAAACTAATTTTCAAATGTATAAGTTATACTCAGTCCTCACAAACTGTTTTTAAGGCAGGACAAGCATAaatagcattgctgcctcagagttccagggtccctggttcaatcttAAGATCTGGTTACTGTTGGTGGGTTTTCCTGGTACTCAGATTTCcttccatctcccaaaaacacgccagattggctatgctaaattgcctctaggtgtgaatgagtgtgtgaatgtggtgccctgtgatgtactGGCGATCCAATCGGGGTGCATTCCTGCagtcctgggataggctccggataaAACCATTActgaaggatggatggatggatggatggatatgtcTATGAGAATGGCTGCCCACTATAGTGATTGGCATCTGCAAGTGGTTCAGATCCAGGCTCAGTGTAGGTGGTGCCATATCTACCAAGGAGACTACATGCAGTCTGGATTATATTATctaattacaaaaaataatacatttgaaAATACACATGATCAAACTAGTTACTTTTTAATGGATTATTTGGTTACATTTATGCATAAATGAATCAGTCTAATAATCTGTAATTTATTGAGAGTGCCCATAAACTGCATAATAGCTCTTACTATAACTGAGCTAACATCAGAGAAAGGGTTCGCTAGTTATCTACTAGCTATCTACTGCAATGTTAATTTATTGTCTATTTTTATCACACTTTGCTATTTATTTAAGTCCCTATGTATGAGATCTGTTATGTATTTTTAGAGCTCTAGGCTGGTGTCTAAATGACTTTGTGAGCCTTTTTGATTTGACTGTACTCTTTTCTTTGCAATACATCTAGTCATCTCAGCTAACTGTTAATAGCAGAAGGCAATGAAACTGTTCTGTAAACATATGTGGCTAGCTTAGGTTAGGATGTGTGCTAATTGGTAAAAACACCAGACATATTGTACCAGAGAGTTTGCTCCCAGGAATAACAGATTGTAATGTTTTGAGCTGATTCTAATTATTATAGGTTGGTGTTTAGGTAAAATATGTTAACAAAGTGCAAAGTTCACATTCTTCAATTTAAAAACAGACACTGATGTGTTAgcttttctgtatttaaaaaaaaataaattaaaaaattcaggGAGTGTTACATACAAAATACACTTTAGATATCAAGATTCtgatactgaaatcccacttGTGTCCACCTGTGACATATCTTACAGTTTACTAACAGTTACCTAGCCATCTAGCTGGTTTGCATATTGCACATTTATTCATAGATCCTggagtgtttttgtgtgtgtatttcaaatTAAAAGCATATTAAACAAATAGTTATTTTTCAAACTATAGGTTttgtttaatggtttaaaaagtACATGTTCATGGGTTGTTTTAATgctagtttctgaaataatgagTATGTCCTGGTGTCacccttttttaattttattattatgatattgcGAGATTATAGAATGTTAATATACCATGTATAGTATGTACCATGTTACTTTGTAGAGTGTGTCGTTAtagttatcaaaaaaaaaagtgggatgTCAATAAGGAGTCGGTTGTGTCACAGTGCTTTTAGATGAAACctgtcattttgttttctttttttttaatgaaaggaGTGTTATTTGACATTCTCAGTACTTAATGTTACATTACCTAAAAAATATTGAGCAGGCTTTAATAAATGCATGTAGAGGGGTAATAGGTATGTATTCCTCATTCCACAGAAGTATATGAAACCAATAAACCAGTTAGATTCAAGGCAGTCCAAAATAAGTCCAAGAGTTCTCAGATTATATTACACTTCCTAAATAATCATTAGTAACCAGTAACACAATTTCCCTGTAATCTCCCCAACACTGCTGTCCTTCAGTCttgcattttaatatgttattgaaGTTAAGGCAAGTTCAACTGTGGTGAGTGGTTATATTTTTTGTAGTGAAAGTTTTGTAGTTTCTATGGTTTGGATTtgtataatgttataaaatattgtatgttacataaataaaatatctgaaaatC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579344.1 lncRNA downstream 82455 12446461 ~ 12463878 (-) True LOC117598772
TU248758 lncRNA downstream 212671 12333454 ~ 12333662 (-) True G209984
TU248756 lncRNA downstream 247356 12298124 ~ 12298977 (-) False LOC113528332
TU248726 lncRNA downstream 309141 12236974 ~ 12237192 (-) True G209961
TU248715 lncRNA downstream 371926 12173454 ~ 12174407 (-) True G209951
TU248929 lncRNA upstream 27219 12586431 ~ 12587089 (-) True G210123
TU249181 lncRNA upstream 308378 12867590 ~ 12868480 (-) True G210351
TU249178 lncRNA upstream 310040 12869252 ~ 12870186 (-) True G210349
TU249180 lncRNA upstream 362725 12921937 ~ 12923464 (-) True G210350
TU249177 lncRNA upstream 367433 12926645 ~ 12928808 (-) True G210348
XM_026917235.2 mRNA downstream 3271 12537412 ~ 12543062 (-) True ankrd40
XM_026916906.2 mRNA downstream 16032 12526340 ~ 12530301 (-) True wfikkn2a
XM_026916992.2 mRNA downstream 151755 12389706 ~ 12394578 (-) True LOC113528448
XM_026916918.2 mRNA upstream 3738 12562950 ~ 12583366 (-) True zgc:171844
XM_026916093.2 mRNA upstream 28463 12587675 ~ 12591505 (-) True mfsd6l
XM_034309783.1 mRNA upstream 34365 12593577 ~ 12612926 (-) False pik3r6b
XM_034309784.1 mRNA upstream 34365 12593577 ~ 12609754 (-) False pik3r6b
XM_026916230.2 mRNA upstream 34365 12593577 ~ 12609754 (-) False pik3r6b
TU248759 other downstream 207064 12333858 ~ 12339269 (-) True msrb1a
TU248755 other downstream 230864 12300005 ~ 12315469 (-) False LOC113528332
XR_003402971.1 other downstream 520761 12025502 ~ 12025572 (-) True LOC113528656
XR_003402968.1 other downstream 790410 11755825 ~ 11755923 (-) True LOC113528652
TU248329 other downstream 845232 11699906 ~ 11701101 (-) False zgc:162612
trnas-aga_12 other upstream 267246 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579330.1 other upstream 836254 13395466 ~ 13399225 (-) True LOC117598755
XR_003402937.2 other upstream 1444957 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 1461036 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 1928609 14487821 ~ 14490775 (-) True LOC117599009

Expression Profile