RNA id: XM_026917043.2


Basic Information

Item Value
RNA id XM_026917043.2
length 1872
RNA type mRNA
GC content 0.43
exon number 4
gene id cacng1b
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10345265 ~ 10355473 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTGGACAACGAGCTGCAGTGAGGAATCTGTGGGTTGCTGTGTTGAGTTTTGGATTTAGCCCACAGACCCATAGCATAAGAGTAAGGGGGAAAAGTATACCACCTGCCTGCTACTTGCTGAGCGTAACTGCTGCACAACCATGCTGAAGGACAAGAAGACCAAGGTGAAGATCACCTTCTTGGTCATTGTTGTGGGCATCTCATCCATGCTTGCAGCCGTGGTGACAGATCATTGGGCCGTGCTGAGCCCCAGAGTAGAAAAACTTAACACCACCTGTGAAGCAGCCCACTTCGGGCTTTGGAGGCTCTGCAAGAAGAGTATCTTCATTGTGGAGGAAGACCCTCAGGGCAAAGGCTGTGGCCCCATCAGCCTGCCTGGAGTCAAGAACTGCTCCTACTTCAAACACTTTACGTCAGGGGAGGAGGCCGAAGTTTTCGAAGTCAAGACTCAAAAAGAGTACAACATCTCAGCTGCTGCCATAGCCATCTTCAGCCTGGCCTTCATGACACTGGGCAGTCTGTGTCTCCTAGGGGCCTTTGGAAAGAGCAGAGACTACCTACTAAGACCGGCTGGCATGTTCTTCGCATTTGCAGGTCTCTGCATAGTCATTTCAGTGGAGGTCATGAGACAGTCTGTCAAACGCATGATTGACAGCGATGAAACCATCTGGATCGAGTACTACTACTCGTGGTCCTTTGCATGTGCCTGCGCTGCCTTCATCCTCTTGTTCCTCAGCGGGATCAGCCTGCTGATCATCTCCATGCCTCACATGCCACGGAACCCGTGGGAGACCTGCATGGACGCTGAGCCTGAGCCCATGGACTAGCAGAGCGCCTTTACCAGTCAAATCAGGGTTTGGCACACAGTAAGAATGCATGATAAAGAAATCAACACATACAAGGTGTTGTAAGAGAGTTTTATATTGACTTTGGCATTGTGTTCATTGGAAGCAAATGCATTCATGCTTAGAGGAGGTTAAGTCTGCTGTTTTAGACAACAAAGTAGCATTTCATCCAGTGTCAGAATTTCCATATGTGATGcttttttgattcatttgactTAGGATTTTGCAATTGTGAAATATTCTTTAAGGTTCACTATGCTATGCGAAGTGGAATTGAGGATGCAAGTATGTATTTTTCATTACCCATATAGCCCAGTTCTCTGggtatttctttaaataatttgatGTTTTAGTAAAGGTTTATAATTTAGGATAATTAAGATTGCTCTATATTATGACACCACTATTCATTATTACATAATGAAGAGCAAGAAACATCTACTGCAAAATTAATTCTCTGTGTAATAAAACAACTTAAGAACAACTGAGATCTTGAGATGCATAAAATGACTCATAATCaaatgtgtggtggtctgggaaactTGTCGGATGTCACAgcggctgaattctggaaaacagctgaaaaaaaaggttttttccCAGATCAAAATTTATGGCCTTTTCAAGAAAccatatgtacactatatggccaaaagtatgtggatgccTGATCATTACAGccatgtgggccttccccaaactgctgctgCATTTTTCAAAGGGCTAGACCTCATCAAAATACAGTCATATatatatctagatgtgttaaacaacttagaacaatAATTGTAGAACTTACaataatcaaaaatattggaacatgtgactgacaggtgtgccctgttagactgattgtttaaacaactAATATCTCTGAATGTCTACACTTTGTTTGAGCTCTGGGTTTTGCCTTTAAAGAAGGTGTTGAAAGGATAAATCAACATGAAGCCTAGAgggctgtctatgggagaaaagcaagccattttgaagctaagaaaagaaggaaaactgATCAAAGCtgttgc

Function

GO: NA

KEGG:

id description
K04866 CACNG1; voltage-dependent calcium channel gamma-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247529 lncRNA downstream 3043 10341911 ~ 10342222 (-) True G208951
TU247314 lncRNA downstream 54380 10221710 ~ 10290885 (-) True G208771
TU247295 lncRNA downstream 158013 10187036 ~ 10187252 (-) True G208758
TU247174 lncRNA downstream 278909 10063977 ~ 10066356 (-) True G208649
TU247080 lncRNA downstream 417357 9877627 ~ 9927908 (-) True LOC117599011
TU247554 lncRNA upstream 92263 10447736 ~ 10450540 (-) True G208964
TU247571 lncRNA upstream 162869 10518342 ~ 10518947 (-) True G208980
TU247589 lncRNA upstream 278062 10633535 ~ 10634150 (-) True G208998
TU247803 lncRNA upstream 733540 11089013 ~ 11144984 (-) True G209189
XR_003402938.2 lncRNA upstream 863186 11218659 ~ 11221378 (-) True LOC113528410
XM_026916857.2 mRNA downstream 49142 10230636 ~ 10296123 (-) False pitpnc1a
XM_026916856.2 mRNA downstream 49143 10230636 ~ 10296122 (-) True pitpnc1a
XM_034310094.1 mRNA downstream 115866 10223395 ~ 10229399 (-) False dxo
XM_026916901.2 mRNA downstream 116451 10223395 ~ 10228814 (-) True dxo
XM_026916019.2 mRNA downstream 131854 10209348 ~ 10213411 (-) True anks4b
XM_026916162.2 mRNA upstream 4713 10360186 ~ 10373055 (-) True cacng4b
XM_026916003.2 mRNA upstream 25720 10381193 ~ 10384307 (-) False aimp2
XM_026916002.2 mRNA upstream 25720 10381193 ~ 10384306 (-) True aimp2
XM_026916204.2 mRNA upstream 48307 10403780 ~ 10407080 (-) True pvalb8
XM_026916202.2 mRNA upstream 57532 10413005 ~ 10414768 (-) True pvalb4
XR_004579397.1 other downstream 614015 9730842 ~ 9731250 (-) False hoxb8a
XR_004579423.1 other downstream 870787 9466480 ~ 9474478 (-) False copz2
TU246803 other downstream 925681 9409804 ~ 9419584 (-) False prr15la
trnac-gca_22 other upstream 29576 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 96023 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1077037 11432510 ~ 11432628 (-) True LOC113528663
XR_003402963.1 other upstream 1181087 11536560 ~ 11536678 (-) True LOC113528647
XR_003402973.1 other upstream 1210537 11566010 ~ 11566128 (-) True LOC113528658

Expression Profile