RNA id: XM_026917045.2


Basic Information

Item Value
RNA id XM_026917045.2
length 1986
RNA type mRNA
GC content 0.47
exon number 15
gene id cln3
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6138100 ~ 6147618 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtacgaGCTGTTAGCCAATCAAAGCGCAGGAGGCGGGCATTGTCAGAAAGTCGGGTTAGCAAAACACGAACCGCTGATGCATCTCAAACTGGAACATTTTGAGGTCATGAAACGGGAACAAAGAAGCTTATTTTCGTTATTGGTTCtctgaaaacacaaaactgtGTTTTATCTAATCTAAACCCAGTGGTATGTTCTGGTTGATGCATTAGTGAAGAAGACGTTTGTCTTTGCCGATTGTCTTCACCATGGATCAAAGAGACAGTGTTAATGCTGACTCTGATAGATCCACTGGCTCTGAAGCTCGCTGTCAGCGATGGAGGAATCAAAGCGGGTTTTGGTTGCTTGGTCTGTGTAATAACTTTGCCTACGTGGTGATGCTGAGTGCCGCtcatgacattttaaaacaacaggAGTCTCATAACGCAACAGTGCCGTCTACAGACCTCCTACACTCACACAGCGGAAACAGCAGCAACAGTAGCCGCTACGACTGCAACCCCGTGTCTACTGCAGCTGTTCTTCTGGCTGACATCTTACCCACTCTAGTGATCAAATTGACAGCGCCGTTTGTCATACACAAAATGCCTTATGGTTTCCGTATTCTGGTGTGTGTCGCCACGGCAACGACCAGCTTCTTAGTGGTGTCATTTTCTTCAACTGTGTGGATGAGCATATTAGgtgtgatcTTTGCCAGTGTGAGTTCAGGACTGGGCGAGctctccttcctctccctcACGGTCTATTTCAGCAGTGATGTGCTGAGCGGATGGGGATCAGGTACAGGAGGAGCAGGAGTGGCCGGCGCTTTCCTTTACTCTGCTTTTACACAGGCTGGGCTTTCACCCCGAGTTACGCTGTTGATCATGCTGGTCATCCCTGCTGTTATGCTGATCAGTTACTTCCTCCTTCTAGtcttccctccctccttcccacAGTGGAAGTCTGGGTCTGGTTTGCTCTCTGGGGAAGACTTTCAGGAACGGCGGCCCTTAATAGTGGATGATAACGATGAAGATTTTGTTCAAGATGAGAAAGGGAGAGAGGACCGATGCACCAGACCCCTGACCTTCTCAGACAAACTACATATCctgaaaGGTCTGCTAAAGTTTACTGTGCCTCTATGCGTGGTCTACTTTGCTGAATATTTCATTAACCAGGGATTGtTGGAGTTGCTCTACTTCCCTGCTTCCAGTTTGTCTCACGCAGAACAGTATCGTTGGTATCAGACTCTGTACCAGATTGGTGTGTTCATATCCCGCACTTCGCTCTACTGCATTAAGATCAGGAGAGTCTGGGTGCTTTCTGTGTTGCAGTGTGTGAACGCAGTCGTGCTGCTTATTTCAGTGTATTGCCAGTTCTGGCCATATGTTTGGGTCGTGTTTTTAATAGTTCTGTATGAAGGTTTGCTGGGAGGAGCCGCCTACGTTAACATCTTCTACTTAATCAGAGTTGAgACTGGGGACCGTGAGAGGGAATTTGCGATGGCTGCAGCGAGTGTGGGAGACAGTATAGGCATTGCTCTCTCTGCAGCACCAGCCATTCCAATACACAACTACTTCTGCTCTCTGTGAGGGAgaccacagacagacagacagaaagacagaggtCTTAGTGTACTTTATGCAGACACAACGTTAAGCTGGCCTCCACAAACATTATCACTTATTACAGAGCACAGAGGCTTTGTTCACCATGTTGTGCACACTGGAGAACTCTGAGAAAGAACACACTATGTGACCAAGACTGTGGTTGGTCTGTACAAATGAGCCATGCTCAAGATGATTCATTCCAAGATGGATGACTTTGAGGAACAAACCAACAAACCGCAGTGGGTGTGTGAGCTCGTAAGCTCGCAAAGGTGTTTCCATCTCCACATTAAGCATGCCGAGGCCTTTAAGTTGGTGGTATATTTCAAACCATGgaagaagcaaaagaaaaagaactttTCTCtgtctacttaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K12389 BTS, CLN3; battenin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244306 lncRNA upstream 146028 5990607 ~ 5992072 (+) True G206339
TU244238 lncRNA upstream 174019 5937248 ~ 5964081 (+) True G206291
TU244254 lncRNA upstream 193668 5940879 ~ 5944432 (+) True G206301
TU244235 lncRNA upstream 212915 5918445 ~ 5925185 (+) True G206289
TU244231 lncRNA upstream 239900 5897385 ~ 5898200 (+) False tmem98
TU244377 lncRNA downstream 32478 6180096 ~ 6194964 (+) False ypel3
TU244409 lncRNA downstream 104726 6252344 ~ 6253065 (+) False LOC117598831
TU244542 lncRNA downstream 336061 6483679 ~ 6509229 (+) True G206540
TU244777 lncRNA downstream 403273 6550891 ~ 6551152 (+) True G206722
TU244866 lncRNA downstream 541838 6689456 ~ 6737847 (+) False G206801
XM_034310028.1 mRNA upstream 3528 6130780 ~ 6134572 (+) False si:ch211-198p11.6
XM_034310027.1 mRNA upstream 3528 6130809 ~ 6134572 (+) False si:ch211-198p11.6
XM_026916485.2 mRNA upstream 9289 6119493 ~ 6128811 (+) True zgc:100868
XM_026916487.2 mRNA upstream 9289 6119525 ~ 6128811 (+) False zgc:100868
XM_026917100.2 mRNA upstream 112261 6024296 ~ 6025839 (+) True LOC113528511
XM_034309894.1 mRNA downstream 12716 6160334 ~ 6175151 (+) True mapk3
XM_034310099.1 mRNA downstream 33181 6180799 ~ 6188261 (+) False gdpd3a
XM_026916041.2 mRNA downstream 33183 6180801 ~ 6188261 (+) True gdpd3a
XM_026917286.2 mRNA downstream 42473 6190091 ~ 6194481 (+) False ypel3
XM_026916099.2 mRNA downstream 50022 6197640 ~ 6204209 (+) True LOC113527922
TU244359 other upstream 3529 6130783 ~ 6134571 (+) True si:ch211-198p11.6
TU244360 other upstream 3529 6130783 ~ 6134571 (+) False si:ch211-198p11.6
TU244082 other upstream 477252 5657612 ~ 5660848 (+) True G206166
XR_003402965.1 other upstream 1046768 5091248 ~ 5091332 (+) True LOC113528649
XR_003402966.1 other upstream 1047184 5090832 ~ 5090916 (+) True LOC113528650
XR_004579365.1 other downstream 12716 6160334 ~ 6175366 (+) False mapk3
TU244376 other downstream 42547 6190165 ~ 6194964 (+) True ypel3
TU244415 other downstream 106850 6254468 ~ 6260857 (+) False LOC117598831
XR_003402939.2 other downstream 936823 7084441 ~ 7096679 (+) False eftud2
XR_004579327.1 other downstream 960560 7108178 ~ 7115935 (+) False LOC113528597

Expression Profile