RNA id: XM_026917046.2


Basic Information

Item Value
RNA id XM_026917046.2
length 1354
RNA type mRNA
GC content 0.48
exon number 1
gene id rprml
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7984469 ~ 7985822 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctcacacacacacacacacacacacacaatgagacTATGAGACTATATGATGTCCACGAAGAGCGCAGTTTCATCGCTCACTAGTTCCCTGCGCCTTTACGCACCATCATCCTCTTCACTCCAGCTGGAAGCGCCACCTGAGAAGGAGACAGCGGGACTTTCTGCGTCTGCGCTACAAGATAAAAGTTCACAATTAAGCGGCTAATTCATTTCTAGAGGACTTTTTCCCCATGAGACGCATGAGAAGCAGAAGCAAGCGCGCAAACAAGACGTCTGGTGAACATCTGCATGACTGAAGGACGCAGCTCGCTCCGCGCCTCGCCATGAACGCGACGATCTTCAACAGCACGCTGTTTGCGCACGGCGCTCTGCTCAACAGCAGTCAGCAGCTCGCGGGCACGCTGGTGGACGAGGTGAGCGCGAGCGACGGCGGCGGCGGCGCCGGTGGAGGATCTCTGGTGCTCGAGCCGGATGAGCGCAAGCTGTTCGTGACGCGCGCCGTGCAGATCGCGGTGCTGTGCGTGCTCTCCCTCACGGTCGTCTTCGGCATCTTCTTTCTCGGCTGCAACCTCATGATCAAGTCCGAGAGCATGATCAACTTCTTGGTGAAAGAGCGGCGGCCGTCTAAAGACGTCGAGGCGGTGATGATCGGTCTCGGGTAACAGCACCGAGCGCGAGGACTGATCTGTGCACCGGGGCGGAGGGTCGCCGCGCGCCTGGTTTCATGTTGTGCAGCGCGTGAATATGCAACTCGTTCATTTCATCGTTTGCGTTTGTCGAGGAAAAGCTGAACGAGACTTTCAAGTGTCTTTAAAAGTCTCATTCATTACAGTGACTGTCACAGAAATGGAATTTGCACGCTGAAAATATTGAGAATGTATCgatgtttattgtttaaaattttttaaaaatatatctattatgttaaaatgaatattcGAGCCAGTTTGTTGCATTCGGGGTGTTTGACCTTTACAGTGAAAATATGTTTACACGTTTTTTACCTCAAGTGCAAAAACTATTAAAACTTTTAACTTCCAAAATGCATGCAGCTGAATGGAGTAAATGTAGCCTATGCATCTGGCACCGTGGCTGTTTTTAGTTTCGAAAGATGtttaagtgtattttttttcgcACGGTTGGAGGAAATATTTATCATCAGTAATATTTGCACGTTTTCCTCCGAGTCCCTGGGTTCTCTGCTGGAGATGCAGCATGTGCGATGCTCCTTCTGAGTTTTCTGTCTTGCACTTTCTTATGAAACTTCAGTGCTGCTGCATGAACTGTTTTGTACATAAAGATGAAACTTGAAGTAGTCCAGCGTGTGTCAATAAATCTAACCTTTCAGTGTTG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245771 lncRNA downstream 36298 7943678 ~ 7948171 (-) True G207540
TU245640 lncRNA downstream 419497 7559767 ~ 7564972 (-) True crhr1
TU245440 lncRNA downstream 670814 7312082 ~ 7313655 (-) True G207254
TU245380 lncRNA downstream 722356 7255625 ~ 7262113 (-) True G207205
TU245403 lncRNA downstream 743562 7240241 ~ 7240907 (-) True G207227
TU245797 lncRNA upstream 43384 8029206 ~ 8029449 (-) True G207565
TU245805 lncRNA upstream 47460 8033282 ~ 8036848 (-) True G207571
TU245906 lncRNA upstream 124836 8110658 ~ 8114574 (-) True G207653
TU245903 lncRNA upstream 190536 8176358 ~ 8200778 (-) False G207650
TU245901 lncRNA upstream 210077 8195899 ~ 8200778 (-) True G207650
XM_026917089.2 mRNA downstream 16479 7961774 ~ 7967990 (-) False LOC113528501
XM_026917088.2 mRNA downstream 16479 7961774 ~ 7967990 (-) True LOC113528501
XM_034310213.1 mRNA downstream 16600 7961774 ~ 7967869 (-) False LOC113528501
XM_026917177.2 mRNA downstream 278977 7564292 ~ 7705492 (-) False crhr1
XM_034310293.1 mRNA downstream 279745 7576940 ~ 7704724 (-) False crhr1
XM_026916053.2 mRNA upstream 144545 8130367 ~ 8155274 (-) True rnd2
XM_026917127.2 mRNA upstream 215943 8201765 ~ 8203353 (-) True si:busm1-163l24.4
XM_026917091.2 mRNA upstream 218238 8204060 ~ 8209776 (-) True si:busm1-163l24.3
XM_026916462.2 mRNA upstream 240475 8226297 ~ 8236622 (-) False atxn7l3
XM_026916461.2 mRNA upstream 240475 8226297 ~ 8236621 (-) True atxn7l3
TU245460 other downstream 553397 7425730 ~ 7431072 (-) False natd1
TU245462 other downstream 553397 7425730 ~ 7431072 (-) False natd1
TU245466 other downstream 553397 7425730 ~ 7431072 (-) False natd1
TU245410 other downstream 662507 7318603 ~ 7321962 (-) True G207231
trnac-gca_20 other downstream 710092 7274306 ~ 7274377 (-) True trnac-gca_20
XR_003402917.2 other upstream 264063 8249885 ~ 8267638 (-) False slc4a1a
XR_003402976.1 other upstream 298652 8284474 ~ 8284592 (-) True LOC113528661
TU246334 other upstream 722132 8707954 ~ 8713318 (-) True ndufa4l
trnav-cac_10 other upstream 1201698 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 1210674 9196496 ~ 9203640 (-) False dnal4a

Expression Profile