Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026917049.2 |
| length | 1341 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 2 |
| gene id | hcrt |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 6550541 ~ 6555884 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0042746 | circadian sleep/wake cycle, wakefulness | biological_process |
| GO:0042594 | response to starvation | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU244696 | lncRNA | downstream | 204178 | 6273816 ~ 6346363 (-) | True | G206649 |
| TU244662 | lncRNA | downstream | 346345 | 6203312 ~ 6204196 (-) | True | G206628 |
| XR_003402891.2 | lncRNA | downstream | 360615 | 6187474 ~ 6189926 (-) | True | LOC113527891 |
| XR_003402949.2 | lncRNA | downstream | 597037 | 5952798 ~ 5953504 (-) | True | LOC113528476 |
| TU244141 | lncRNA | downstream | 822861 | 5721634 ~ 5727680 (-) | True | G206210 |
| TU244981 | lncRNA | upstream | 90213 | 6646097 ~ 6647814 (-) | False | stat5a |
| TU245006 | lncRNA | upstream | 269012 | 6824896 ~ 6825760 (-) | True | G206924 |
| TU245005 | lncRNA | upstream | 270484 | 6826368 ~ 6828146 (-) | True | G206923 |
| TU245188 | lncRNA | upstream | 546364 | 7102248 ~ 7102389 (-) | True | G207057 |
| TU245372 | lncRNA | upstream | 620648 | 7176532 ~ 7176755 (-) | True | G207198 |
| XM_026916862.2 | mRNA | downstream | 2040 | 6506704 ~ 6548501 (-) | True | kcnh4a |
| XM_026916531.2 | mRNA | downstream | 49071 | 6483671 ~ 6501470 (-) | True | rab5c |
| XM_026916972.2 | mRNA | downstream | 69257 | 6468354 ~ 6481284 (-) | True | kat2a |
| XM_026917300.2 | mRNA | downstream | 82644 | 6461123 ~ 6467897 (-) | True | dhx58 |
| XM_026917301.2 | mRNA | downstream | 82900 | 6461123 ~ 6467641 (-) | False | dhx58 |
| XM_026916533.2 | mRNA | upstream | 1254 | 6557138 ~ 6632345 (-) | True | si:ch211-210g13.5 |
| XM_026916395.2 | mRNA | upstream | 90174 | 6646058 ~ 6726165 (-) | True | stat5a |
| XM_026916398.2 | mRNA | upstream | 90174 | 6646058 ~ 6720994 (-) | False | stat5a |
| XM_026916397.2 | mRNA | upstream | 90174 | 6646058 ~ 6676650 (-) | False | stat5a |
| XM_026916393.2 | mRNA | upstream | 178233 | 6734117 ~ 6764914 (-) | True | stat3 |
| TU244626 | other | downstream | 355545 | 6126910 ~ 6194996 (-) | True | G206604 |
| XR_004579347.1 | other | downstream | 589491 | 5953733 ~ 5961050 (-) | False | LOC113528542 |
| XR_004579346.1 | other | downstream | 589491 | 5953733 ~ 5961050 (-) | True | LOC113528542 |
| XR_004579400.1 | other | downstream | 599544 | 5940862 ~ 5950997 (-) | False | retsat |
| TU244224 | other | downstream | 709064 | 5841137 ~ 5841477 (-) | True | G206282 |
| trnac-gca_16 | other | upstream | 715022 | 7270906 ~ 7270977 (-) | True | trnac-gca_16 |
| trnac-gca_17 | other | upstream | 716371 | 7272255 ~ 7272326 (-) | True | trnac-gca_17 |
| trnac-gca_19 | other | upstream | 717173 | 7273057 ~ 7273128 (-) | True | trnac-gca_19 |
| trnac-gca_20 | other | upstream | 718422 | 7274306 ~ 7274377 (-) | True | trnac-gca_20 |
| TU245410 | other | upstream | 762719 | 7318603 ~ 7321962 (-) | True | G207231 |
