RNA id: XM_034309865.1


Basic Information

Item Value
RNA id XM_034309865.1
length 2224
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC113528485
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18183693 ~ 18342960 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGATACTGCTCCCTGGAGGACACGTGAAGAGGTCATTCTGTGCGAACGTCCGCGCAAGACGTCCTGATGTGCTCGCAGAATCGCGTTTGCAGAAGTAGCCTCAGTGATTCGGCAGTGCTAAAATGGCCACCTCCTCCCCCAATCTTGAAGAAGACGAGAGTCTGAGGGGCTGTGAAGTATTTGTGCAGAAACACAACATCCAACAGATTCTGAAAGAGTGCATTGTCAGTTTGTGCATCGCCAAACCTGAGCGTCCTATGAAGTTCCTACGGGAACACTTTGAAAAGCTGGAGAAGGAAGAAAGCAAGCAAATCTTGGCACGACAGAAGTCTAACTCTCAATCAGACTCACATGATGATGAagtttctcctcctcctccaaacCCTGTGGTGAAGGCCCGACGCAGGAGAGGGGGGGTCAGCGCAGAAGTCTACACAGAAGAGGATGCAGTCAGCTATGTCAGGAAGtgcctcgttcCTGAGAATGAGTTGGTGGGAACAAAGTCAAAAGATCTCCCATGCAGGCcaGTAATCCCAAAGGACTACAAGACAATGACAGCCTTGGCTAAGGCCATTTCTAAGAATGTGCTGTTTGTCCATTTGGATGACAATGAGAGGAGtGACATATTTGATGCCATGTTCCCTGTCACACACATTGCTGGAGAAACAGTCATTCAACAAGGTGATGAAGGGGATAACTTTTATGTAATTGACCAAGGAGAAGTTGATGTATATGTGAATGGCGAGTGGGTGACCAGTATTGGAGAGGGTGGCAGTTTTGGGGAGCTAGCTCTGATATATGGAACTCCACGTGCTGCCACTGTTAAAGCTAAGACTGATCTCAAGCTTTGGGGTATAGACCGTGACAGCTACCGGCGGATTCTTATGGGCAGTACActgagaaagaggaagatgTATGAAGAGTTCCTGAGTAAGGTGTCAATCCTTGAATCTCTGGAGAAATGGGAAAGGCTGACAGTGGCTGATGCTTTGGAGCCTGTACAGTTTgaagatggggaaaaaattgtGGTGCAGGGAGAACCAGGGGATGACTTCTTCATCATCACAGAgGGGACAGCATCTGTCCTGCAGCGCAGATCTGACAATGAGGAGTATGTAGAGGTGGGCCGCCTTGGACCCTCTGACTACTTTGGTGAGATAGCACTGCTCTTGAACAGGCCGCGTGCAGCCACTGTGGTGGCCAGAGGTCCACTGAAATGTGTAAAGCTGGATAGGCCACGCTTTGAGCGCGTTTTAGGGCCCTGCTCCGAAATCTTGAAGAGAAACATCCAGAGATACAACAGCTTCATCTCCCTCACTGTCTGAACCACCACACCAATGGCCTCCAGGCTTGATTACATTAAATAGTTCAGGATAATTCACTTTACACTTATTTAAAGGGTTTCAACTTGTTTCTTTGTGAATCTTCTATGTAACCAggcttcttttttgtttgtttttttaatacatgtttTGTGCAACAAAGATGTGGTGTGAATGATGGAGTGCAAGCTGTAGGCTTTATTCAGTATCTTTTTTTTGgtgcattttttatttcacttattctcttatttctcttattCACTTCTACTGGTACCATCATGTGggcttatttattaattatgagATCTGAAGAGATGGATCAGAGAGgatgtgtacattttacattctgGTGCATGCAATTCCATTCAAAGTGAAGAGAGCAATTTTGAGAGCAAGTTTGAGACAGGGATATTTGGCTTAATTGTATATTGCCTTTTTGCTTAGGGTTTTGGTTCTTAATCCATATGCTGTGTCATTgaattcttgtgtgtgtgtgtgtgtgtgtgtgtttctgaagaCAGACCTGAGCTATTCAGTAGTAATATTTTCTTAGTAAAATCCTCTACAGTTAGGGGATCTAAGTATAAATCTCATAAACTTTCCCTACAGTGGATCTCCAATTGATAGAAATATGAAAATTAGGGTGTTGTTCTGAAgtaagatgtgttttttttattcaggagAGTAAGCTTGCTGTATCCTGATGTTTCCTGAAAGCTTACTGAAATTacctgtttgttgtttgttctaCAATACCATTATTTGGTTGAGACTTTGTTTCAGGTAAAGAGTGATTTTAGACAATTTACAGATTTGATTCTGTATAGTGTcaatacacaaaatacaaatgcaaacatACTCATTCCATTTTTAAAGTCAATAAAGAAACATTGCTGAACA

Function

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0008603 cAMP-dependent protein kinase regulator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252169 lncRNA upstream 200895 17980998 ~ 17982806 (+) True G212899
TU252159 lncRNA upstream 284720 17898781 ~ 17898981 (+) True G212889
TU252140 lncRNA upstream 297419 17886009 ~ 17886282 (+) True G212870
TU252066 lncRNA upstream 357351 17819418 ~ 17826350 (+) True G212804
TU252045 lncRNA upstream 401773 17781712 ~ 17781928 (+) True G212783
TU252175 lncRNA downstream 42852 18385812 ~ 18464023 (+) True G212903
TU252283 lncRNA downstream 66881 18409841 ~ 18410859 (+) False LOC113528171
TU252284 lncRNA downstream 68061 18411021 ~ 18411582 (+) False LOC113528171
TU252293 lncRNA downstream 82234 18425194 ~ 18426053 (+) False zgc:163143
TU252294 lncRNA downstream 82234 18425194 ~ 18427626 (+) False zgc:163143
XM_026916194.2 mRNA upstream 120040 18062037 ~ 18063661 (+) True LOC113527984
XM_026916702.2 mRNA upstream 140599 18021085 ~ 18043102 (+) True mfsd11
XM_026916907.2 mRNA upstream 373211 17808272 ~ 17810490 (+) True LOC113528388
XM_026916729.2 mRNA upstream 416032 17749174 ~ 17767669 (+) True ccdc137
XM_026916310.2 mRNA upstream 480959 17698673 ~ 17702742 (+) False cenpx
XM_034310284.1 mRNA downstream 17821 18360781 ~ 18368589 (+) False tac4
XM_034310283.1 mRNA downstream 24437 18367397 ~ 18368589 (+) True tac4
XM_034310202.1 mRNA downstream 66883 18409843 ~ 18415347 (+) True LOC113528171
XM_034309692.1 mRNA downstream 82219 18425179 ~ 18434528 (+) True zgc:163143
XM_034309693.1 mRNA downstream 82219 18425179 ~ 18434528 (+) False zgc:163143
TU251743 other upstream 1074426 17087291 ~ 17109275 (+) False srl
TU251142 other upstream 2038317 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 2214942 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 2370370 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 4690851 13475828 ~ 13492850 (+) False zgc:158403
TU252614 other downstream 571766 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 571766 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 801114 19144074 ~ 19145240 (+) True G213491
XR_004579333.1 other downstream 958395 19301355 ~ 19313218 (+) True gng13b
TU253379 other downstream 1563242 19906202 ~ 19910165 (+) False LOC113528458

Expression Profile