RNA id: XM_026917067.2


Basic Information

Item Value
RNA id XM_026917067.2
length 1239
RNA type mRNA
GC content 0.49
exon number 4
gene id mpv17l
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3470453 ~ 3477325 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAGTGAGCAGGTGAGTGGCTCTTTAACCCATGTTTATGATGCACACAGTTTTAATCCAGCCTGGCAACCACAGCAGGATGACAGGAGGTTATCCTCGGTTTCAGACACACCCACACGGGCTTCATTAAGTCGCTCACTCACGCGCTTGACTTGTTCAGCAGAGGTCAAATCCTGCCACACTTACCCAGCTCGCGCGAATAaaactctaactctaactctaatTTTAAGAAGATGAGGAAGGTGTTTCCGTGGCTGACCAACGTGTCTCTGTACGGCTGTCTGTTCGCCGGCGGGGATCTGCTCCATCAGCGCGTGACGCACAGGCACGGCGGCGAGCTGGACTGGAAGCGCACCAGGAACGTGGCGCTCGTGGCGTtctgtttccatggcaactgGAACTACTTTTGGCTGCGCGCGCTGGAGCGCCGGTTCCCGGGAAGGTCCCTGGGCATGGTGCTCACCAAGTTAGCTCTGGATCAGAGCTTCTCCTCGCCCTTAGCCACCAGCGTCTTCTACACAGgagTGAGTGTGTTGGAGGGCAAAGAGGATGTATTTGAGGACTGGAGGGAAAAATTCTTCAACACATATAAGACAGGACTCATGTACTGGCCCTTCATGCagTTCCTGAACTTTGTGTTGATGCCGCTGTACCTGCGCACCGTGTTCATGGGCTGCTCGGCGTTCCTGTGGGCCGCGTTCTTGTGTTTCTCGCAGCAGAGTGGCGACGGCACCATGGCCACGGCTCTCGACTGGTTTACCACCTCCGAGAAACGGATCATGAGCCGCAGCACTAATGAGGAGAAGTGATGAACGTGAAGGCACACAGGAACAGCGACCCTGGTGCCTTCTCTCACACTACAGAGGTGTACAGACACGCTGCACAagcccttatttatttatatgcgTGTAATGTCATGTGTTGTGTTACTTGAAATATTTTTCCACTCAATCCGGATACCTCGTATGTCCAAGtatgtgctgataatcagttaaatgatacacacacaatattgtgAGATCAGCACTACATTTTCGTGCCTTTCACAAGGCTAATTATTTATGTACTGCACTAAATAGCATTCATATTGTTGTTTTTCAATCTCTAGATATTGTTCTCATgttgtttagctagctagcataacaCGACCTCACATGAAGCACAATCAGCTCTCTGCTAAgcactgtggttttttttttgcgattgttatattattattttattttatactgcagcactg

Function

GO: NA

KEGG:

id description
K13349 MPV17L; Mpv17-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU242422 lncRNA upstream 67106 3399769 ~ 3403347 (+) True G204679
TU242421 lncRNA upstream 113547 3353298 ~ 3356906 (+) True G204678
TU242361 lncRNA upstream 251569 3215787 ~ 3218884 (+) True G204633
XR_003402893.2 lncRNA upstream 270398 3192704 ~ 3200055 (+) True LOC113527909
TU242118 lncRNA upstream 397727 3064905 ~ 3072726 (+) True G204417
TU242522 lncRNA downstream 56964 3534289 ~ 3587548 (+) False glyr1
TU242534 lncRNA downstream 93438 3570763 ~ 3573520 (+) False glyr1
TU242528 lncRNA downstream 110577 3587902 ~ 3590031 (+) True G204771
TU242524 lncRNA downstream 155846 3633171 ~ 3661164 (+) False glyr1
TU242550 lncRNA downstream 168438 3645763 ~ 3646675 (+) True G204790
XM_034310007.1 mRNA upstream 117601 3317323 ~ 3352852 (+) True LOC113528556
XM_034309687.1 mRNA upstream 172857 3290562 ~ 3297596 (+) True LOC117598751
XM_034310181.1 mRNA upstream 181012 3276048 ~ 3289441 (+) True LOC117598988
XM_026916969.2 mRNA upstream 228466 3236039 ~ 3241987 (+) True mylpfa
XM_026917274.2 mRNA upstream 239239 3225002 ~ 3231214 (+) False zgc:153733
XM_026916222.2 mRNA downstream 2913 3480238 ~ 3483748 (+) True si:dkeyp-72e1.6
XM_026917218.2 mRNA downstream 8419 3485744 ~ 3500428 (+) True rrn3
XM_026916263.2 mRNA downstream 63785 3541110 ~ 3560678 (+) True ppl
XM_034309979.1 mRNA downstream 86325 3563650 ~ 3587696 (+) True glyr1
XM_034309980.1 mRNA downstream 86325 3563650 ~ 3587696 (+) False glyr1
TU242330 other upstream 270320 3192712 ~ 3200133 (+) False LOC113527909
TU242114 other upstream 457594 3003672 ~ 3012859 (+) False pyya
XR_004579364.1 other upstream 1314604 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 1584975 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 1879378 1561594 ~ 1591075 (+) False syt3
TU242670 other downstream 489433 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 489433 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 489433 3966758 ~ 3986284 (+) False limd2
TU242673 other downstream 489433 3966758 ~ 3986284 (+) False limd2
trnae-cuc_26 other downstream 493854 3971179 ~ 3971250 (+) True trnae-cuc_26

Expression Profile