RNA id: XM_026917073.2


Basic Information

Item Value
RNA id XM_026917073.2
length 5269
RNA type mRNA
GC content 0.45
exon number 3
gene id kcnj19a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5788721 ~ 5824200 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgagagagagagagagagggaatactACAGCTTATTCGTGCCCACTCAGTgtccctcctccctccttcctctctcctcttcctctgttcCCAACCAACTCGCCGCTGTGCATCACTTTGTCTCCAGTAACTCTATCATTCCTCCAGGTCTAAAGGAAAAGCGGCTCACTTCCTTCTGACTCTCTGTTGCTTAAAACCCACCTTGTATATTTTCGGGCCCAGTGGACAGTCAGGACCGCGCTCAAGGCAGTTGTTCAGCCCTGATAAGTCTGCTTTAATGATGTTTTGCGTGAAGGAGCGTTGGTGAAGCTGAGCGCTCACGGGAGCGAAATGATGCCGGCTCTGTGAAGGAGACAGCGCGTAAAGACGTCTGCGCAAAGTTGGCCATGGCAGCTCTCCGGAGGAAGTTCGGCGAGGACTATCACCAGGTGGTGAACCCGGCCCGCGGCGGCGCCTTCTCAGCTCCGGTCAAGAAAAAGCGGCAGCGCTTCGTGGAGAAAAACGGCCGCTGCAACGTGCAGCACGGCAACCTGGGCGGCGAGACGAGCCGCTACCTGTCCGACCTCTTCACCACGCTGGTGGACCTGAAGTGGCGCTGGAACCTGCTCATCTTCATCCTGACCTACACGGTGGCCTGGCTGGTCATGGCGTCCATGTGGTGGCTGATCGCGTACGTGCGCGGCGACCTGGAGCGCGCGCGGGACTCGTCCTACACGCCGTGCGTGGCCAACGTGTACAACTTCCCGTCGgccttcctcttcttcatcgAGACTGAGGCGACCATCGGCTACGGCTACCGCTACATCACGGAGAAGTGCCCCGAGGGCATCATCCTGTTCCTGTTCCAGTCGCTGCTCGGCTCCATCGTGGACGCCTTCCTCATCGGCTGCATGTTCATCAAGATGTCGCAGCCGAAAAAACGCGCCGAGACGCTCATGTTCAGCCAGGACGCCGTGATCTCTCAGCGCGACGGCAAACTCTGCCTCATGTTCCGCGTGGGCAACCTGCGGAACAGCCACATGGTGTCGGCGCAGATCCGGTGCAAACTCATCAAGTCTCGTCAGACTCCTGAGGGCGAGTTCCTCCCGTTAGACCAGTGTGAGCTGGACGTGGGGTTCGGGACGGGAGCTGATCAGCTCTTCCTCGTCTCTCCTCTGACCATCTGCCACGAGATCAATCCCAAGAGCCCCTTCTTCGACCTCTCGCAGAGATCGCTCATGAACGAGCAGTTTGAGATCGTCGTCATCTTAGAGGGCATCGTCGAGACCACCGGTATGACATGCCAGGCACGCACCTCCTACACCGAGGACGAGGTGTTGTGGGGTCACCGCTTCTTGCCCGTCATGTCTCTAGAGGAGGGCTTTTTCCGTGTGGACTACTCGCAGTTTCACAGTACATTCGAGGTTCCCACGCCACCCTACAGTGTCAAAGAGCATGAGGAAAAGGGCTCGCTTCCTTCTCCACTTGCCGTGCCACACCGCGAACGCGTCTTCTCTGTCAACTGCTTGGAGCTGGGGGAAGAGCGGCCCAGCCTTGGAGGTAGCGCCTCCTGCAGGCTGCCCAGCAAGCTCCAGAGGATGAGTTCGTCCGGGAAAGAGGAGCTGCCCAAGAAGGTTCTGCGTTTGAGCTCCCAGGGCTCAGAGAAGGCGTCCAGTACGGGCGACTTGCCCCTCAAACTGCAGCGCATGGGCTCCGGTCCCGGCCAGACAGACGACTTCCATCTCAAAGCCCTCAGGGTGGGCTTCGAACCCATGACCATGTCCACCGGAGACCTCCAGCAGAGGAGCCTGCCCCCGATGCCATCACCCATCGCCTTGCCACACACTCACGCTCCTCCACACACTCCTCTGCCGTCAGCTGGAGCCAGAATGGAGGATAAGCTGCCTCCCAAACTGAGGAGGATGAACGCTGACCGCTGAGGTCACAGGGACTTTGTTGTTCTTTgttgctgatctgggatttgaCACGATTTGGGTCCTGCATCAGCATGAAAGAACAACTTCTAACATACATAGAGCATATATAAAAGAGGTCACAGGTCATGGATGAACTGCAAATAAAATCCTGACAAAGAGATGGAAGGGAGATGGAGAAGTGAAAGGACTGATACATGCATGAACAGAGGAGGGTATTTAGTTGTTTGGATGCGTGTTTGTGTCCATTTCACACACTAGTGGACTTTAGATGGGACTCGTATTCTGGTCCGTTTGCACCAACAGGTCACCATTAAAGCTAAGACAGACAGGACTTCACTCCTGTTACATCATCCAAAGTTACACGTGACCACAACGATTACTGACTGAGTGGCGAAGCAATCTGTGTTATTAAGCAAAGCTGCTAGTTCCTACATCCAAACAAAACTCAGTCATTTCTACATTCAACATACTTTTATTTGGCGCTCATATCATGTTTTGTACACTTACTTGATGCATATCAGCATCCAGGGATGCCTGCAAGACAAAATCATCCCAATGGCCTtgaaaaaaccacaaaaaaacaaaaccaatcCTAATTCCAGAACTCAAAATATGTCACTTTTGAACCCTGTATCAGGCATACAGATAAATAATGCATGCAGAAAAAATAGCTTAGGGAGAAGACAGACGCTCTTAaagcaaaacacattttctcttccatttttcacacaaacaagtttttttgcttttgttttctttttcttttttttttttgcaataatgAACCTGTGAACATTTTGTCACAAATGTCACTACATATttcagcagatcctttaaaaatgatttttatgattttttaaaaatggtgtgCTGTTTGTAATATCTGAGCAAGGCAAATTCCAGAAGCCAAGAAATTTGCAAATGCCTCAGCAATTCTTGCAACAGTATTTTTTGCACCTCAAATTTTGCTGTTCTGGTTAAAATCCAGCATGTAGACAGTGGAATTTTGGTGTGATTGGGCTCTATAGGGTTagaataatgttaaataatgttaaaactTATCAAAAGTTGGCATCTGTCAATACTGGCATTCTAATTAAGAATATTATTCACCAAACCATATTTTAGTGGTGGGCTAGAGCCCTGAATACACTGCTTTTATAGTCTAATATCATCACTAGCATTGCAAAATGTATTGCAATAattaaaagtaacattttacaacaaagttacattaaaaacatgtcCTTTTTCTAAATAGTACTTTAATCAACAAGACCTACAATGTCTTATATTATTACagatattattacaaataaagcATATATTTTAGGGATGGTTAACAGTTGTAGctttctacttggaaccctttctgaaagggaaaacctctgttgtagggttttatATAGAAGCTTTAAGGGTTCCCACCAGAGAGACACACCAAAGAATGTTTGGAGTCTATGGAGATAATGTTGACAATTGGCTCAAGAGGCACATGTTTAAGAGCTATTAGTGCATGTTGAAAtgcactacatggccaaaagtatgtggacacctgaccatcacaccctcaTATGTTGAACTTCCCCAAAcatttgccacaaagttggaagcacacacttgtacaggacgtctgtgtatgctgtagcattacaatttcccttcactgggactaagaggcccgaacctgttccagcatgacaatgcacctgtgcacaaagcaagatccATGAAGATGTGGTTTGCTaaagttggtgtggaagaactcgattGTTCGGCACAGAGTCCTTATTTCAACCCCATTATACCCCAttaactccatattaatgccatgcctttggaagaggatgttcaacaagcacatatgggcatcatggtcaggtgtccacatattttaggccatatagtgtatattgtgaGAAAATCATGGACCAGGAAAATCTTAAACTTGCTGTTAATCTGCTCTGAACATAAGCTATAGAGGGACCGTCAGCAAAGTGCACATAATTAAATGCATGCGCTGTGAAAATGCCAAACCAAAGTTATTAATGACTATATCTATAAACAATTACAATAACCAAAATGGCTGTGAACCCTAGACTAACCCAGTCAAATGGAGCATAAATGTCACTCATTTACTGGAATTAATATGAGCAGAAATTCACCAAACATGCATTGAATGATGTACAATTTGACCTCAGTCCCTTAATAGGCATTTAATGGCCAACAAATGCGAGTGAGACATTAAAGAAACTATTAAATATAGTGTAGATATGAGTAACCTAGGAGCGTGTGTTCTGTTCATAAGGTATatgaatgaaacactttttaGGCTCTTTGAATGCTGTTGTTATTGGAGATGTAAATGTGTGGCAAATATCACATATAAAACTAATTTTACCTTCATCACTGCACGGATGAAGGATTTTCATAAAGGTTCTCATTATCAGGAGTTAGTAaatggtttattattttcttctttctatatTGTGCTGCTTCTGTGTAATAACTACTACCACGTCCTAGTGCAGGTGGAAGGGATGATTGCAAAGCCCAGAGTGCAGGTGGAAAAAACAGTGCAGTGCCATTTTCATggttctctttatctctgaGTTGATTGTTTTTGTTGGGATGCAGTTTAGATTTATGGTTGTCAACTCCCATGCAAggaaaaaaactgtaaagaCCTTTTGACTGACACAAGAAAGGAAATGTCAGTTCCTCCGAGTCACATTAGTAAATACCTTAGAGTGTCTGATTATGTTGATATCAATGCCTGTGCTTTATGAATATGACAGATTGAATCCACCTTTAGATAAAATATCTGCTGTTTATAGTGGTTACCATGACATCAGCTTATAGCTTGACTTTATGCTCACATAATACCCATGTAAAACtagtaacaaaaaatataatatatgacCCAGTTGGtgcatttgatttaatttacacCCAGAAAGCTATTACCTTGCTGGTGCAACGGACCCCTAGCActctagcacacacacatgctcacatacacactcacaaaccATGTGTGCATGCAATTACACTTCACCATCTCTGTGTAGCACCATCTCTCATCATAGTCCATTAGTttggaaatgaataaattatatttaagagGCTTCATTTGTGGTTATTATTCTGAGCTGGTAAATTAGCATCATATCACTGATTAGTAAACTTCTTTAActttctttaagaaataaaacacaataccacatgctgttataggaaaataatcaacgacggtggtgtgatgcagcccggCACCAATCAGGGTTACTATTGTCaccccaaagttaattatttttccaaaattatATCCAAAATTGTTTAAttccttttat

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015467 G-protein activated inward rectifier potassium channel activity molecular_function

KEGG:

id description
K05330 KCNJN; potassium inwardly-rectifying channel subfamily J, other

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244156 lncRNA upstream 31782 5754852 ~ 5756939 (+) True G206221
TU244143 lncRNA upstream 53114 5735370 ~ 5735607 (+) True G206212
TU244073 lncRNA upstream 159062 5629458 ~ 5629659 (+) True G206157
TU243315 lncRNA upstream 707517 5079987 ~ 5081204 (+) True G205454
TU243310 lncRNA upstream 774205 5003626 ~ 5014516 (+) True gosr2
XR_004579445.1 lncRNA downstream 44662 5868862 ~ 5869806 (+) True LOC117599005
TU244231 lncRNA downstream 73185 5897385 ~ 5898200 (+) False tmem98
TU244235 lncRNA downstream 94245 5918445 ~ 5925185 (+) True G206289
TU244238 lncRNA downstream 113048 5937248 ~ 5964081 (+) True G206291
TU244254 lncRNA downstream 116679 5940879 ~ 5944432 (+) True G206301
XM_026916897.2 mRNA upstream 161741 5108421 ~ 5626980 (+) False asic2
XM_034310193.1 mRNA upstream 161741 5115179 ~ 5626980 (+) False asic2
XM_026916896.2 mRNA upstream 161741 5494957 ~ 5626980 (+) True asic2
XM_026916179.2 mRNA upstream 684847 5096322 ~ 5103874 (+) True hrob
XM_026917205.2 mRNA upstream 696904 5089263 ~ 5091817 (+) True rps11
XM_026916323.2 mRNA downstream 65352 5889552 ~ 5897559 (+) True tmem98
XM_026916324.2 mRNA downstream 65383 5889583 ~ 5897559 (+) False tmem98
XM_026917100.2 mRNA downstream 200096 6024296 ~ 6025839 (+) True LOC113528511
XM_026916485.2 mRNA downstream 295293 6119493 ~ 6128811 (+) True zgc:100868
XM_026916487.2 mRNA downstream 295325 6119525 ~ 6128811 (+) False zgc:100868
TU244082 other upstream 127873 5657612 ~ 5660848 (+) True G206166
XR_003402965.1 other upstream 697389 5091248 ~ 5091332 (+) True LOC113528649
XR_003402966.1 other upstream 697805 5090832 ~ 5090916 (+) True LOC113528650
XR_003402964.1 other upstream 698117 5090520 ~ 5090604 (+) True LOC113528648
XR_003402967.1 other upstream 698438 5090198 ~ 5090283 (+) True LOC113528651
TU244359 other downstream 306583 6130783 ~ 6134571 (+) True si:ch211-198p11.6
TU244360 other downstream 306583 6130783 ~ 6134571 (+) False si:ch211-198p11.6
XR_004579365.1 other downstream 336134 6160334 ~ 6175366 (+) False mapk3
TU244376 other downstream 365965 6190165 ~ 6194964 (+) True ypel3
TU244415 other downstream 430268 6254468 ~ 6260857 (+) False LOC117598831

Expression Profile