RNA id: XM_026917074.2


Basic Information

Item Value
RNA id XM_026917074.2
length 4146
RNA type mRNA
GC content 0.44
exon number 7
gene id tfap4
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17067237 ~ 17085755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTCACTTCACTACTGTACAGCGTTGCAAGCGCGCTCGTGACAATTAAATGTATCCACTTGAAGCGgtttttgtcagattttattttttaaatacaatactCGACAAATATGTTTTCGCAGTTACCACACAGCTAATCTACTACGACATAACGATTGATTCTCTGAATTGTATGGTAAAATATTACTTATAACTCATCTGTAAGTAGCTGAAATGCGAAGCTGTCGTGTAGCTTAAATAATGATTTGTTTACAGTGGCTATTTTTGCCCGGCGGAACGCGGGGTTTTTGTAGTGCTGCGTGATTCCTACCAGCTGTTTCCCGCCTTGAAAGACACCCGATCAgctgcaaatacacacacatacacgtacatgcagaaggagggagggagacgGGGGAGGGAggttgagaaagagaaagagcgcCACACACTACGAGGGAACCCCATCAGCTGGAAGTAGAGTATCATTACAACTCTTCACGCTCCGCAGACGTTGCGTTCGTATGCAAACAACTGCAAATTCAATCGCACAGTCTGAATTGTTCTTATTAAATGCGCAATTGCTCGCGAATACACAGCAGAAAAGAGCGACGATTCATAATAAACGAAGTGTTAGGAAAAATCGCGGACTCAAAGCTGGAGAGGAAAGCATGGAGTATTTCATGGTACCAGCTCAGAAGGTGCCCTCCTTGCAACATTTTAGGAAAACGGAAAAAGAAGTCATAGGGGGCTTGTGTAGTTTAGCAAACATCCCCCTCACACCAGAAACGGCACGGGACCAAGAACGACGCATTCGCAGGGAGATCGCCAACAGCAATGAGCGCAGGCGCATGCAGAGCATCAATGCTGGCTTCCAGTCCCTCAAAACACTCATACCACATAGTGATGGAGAGAAGTTGAGCAAAGCTGCCATCTTACAGCAGACTGCCGAATATATCTTCTCTTTGGAGCAGGAAAAGACACGGCTACTGCAGCAAAACACGCAGCTTAAGCGCTTCATCCAGGAGTTCAGTGGCTCATCCCCAAAGAGAAGGCGTGCAGAGGAGAAGGATGAAGGAATAGGATCTCCGGATATtctggaggaggagaaggtggAGGACCTGCGGCGAGAAATGATTGAACTCCggcaacagctggagaaagaacGCTCAGTGCGCATGATGCTAGAGGAGCAGATTCGCTCTCTGGATGCCCACCTATACCCTGAGAAACTGAAGGTGATCGCCCAGCAGGTGCAGGAGCAGCAGGTGCAGACTCAGACTCTGCTTCGCCTGCAACAGCAGGAAcaactggagagagagagcactccTGCCCGCAGTACACAGGTATATTCTCCAGCCACACCATCTGCCCCTACGCATCACACCACTGTTATTGTTCCTGCCCCAACGTTGCCACCTCCTCCCCATCATGTCACAGTGGTAACTATGGGCCCTGCCTCTGTAATCAACACAGCATCGACATCACGACAGAACTTGGACACCATAGTGCAGGCTATCCAGCACATCGAGGGCACACAGGAGAAGATGGGTGTGCCTGAGGAAGAGCAGCGTCGGGCAGTCATCGTCACCCCGGGCCGTGTCTTAAATGACACTGCGGACTCGGACACTGCCTCTGACAATGAAGGTTCTGAGGACTGTTAACTGCACCAGGCAAACAGGGTGGCCATATGGAGTGGCCTCCTACAGACTCTTTTTCACTCCCTTTCATTATCTCTTTCTCATATAGGCTTACAAACCCATAGGGTAGGAAATGGTTTAGTCAAAGATTcaatgaacaaaaaaacacaactaaaaAGCAAACTTACCATCTCACCCATACTTGGACTTGTACTCGCACTCTCATACAGTGCACTAGACTATTTTATCACTCTGGCCCATTATGTGCATCCATCCATACTTCCAGAACAGGCTTTCagttgctaaataaataaataaatcttttccaTTCATACATGATGTTGAAATGAATCAGGCTCAAACAACTGTCTCACATAACTGTTCTTCTGCATTCTCCCACTATTCACTGCTTTTTTCTGGAATGGACAGTTTCTTGggcctttctgtctctcacccatcccttcctttttttcctgtaaaattCTCTAACTGGAGAAACTCTTACCTACCAACCCATCCCTCTCACACCTATGACTGTCTAAAGAATCTTTTGATTACTCCAAACATCCCTCCGTTCTTCCTTCTGGCCTAGGGAGGCTTTAGAGCACCACTGTGAGCTTACCTAACTTCAGAAGCCAAATGTACTCTTCATTGGCTTTGAATTTTTAGAGGAAATGACATGAGTACAGCCATCATGGGAATCCATTTAAGATGCCTCTGGTCCCAGCAATGCTCCACCTCATGGAGCGCAAAGATCATCACTGCACTTTGTAAAAGTTCTTTTGGAGGGAGGGGACAGAATGTGCACTTGGTGTCATTCACACTCAGCTGGGCTGGGTTCCCAGTACAATAAACTTATGTAGGCAACGCAGCCCTACCACCACATCAAACTCCCAGCTCTTTTATGTTGTTCCTAATGCTGGTCTAAtgttttttgtctattttgtcCATCAAAATTGAATAAGCTAACCAGTAGGTGCTCTGCAGAGAGATGTATTTCCCTTACGTGTGGTTCAGCTAGGAGGATATATGCTGTGCTGGCATCAGCTGGCTGCCTGAGGGTCAGTctctcatcaaaaaaaaaaaaaaaaggtggcaGTAGTATTTGCAGATTTCTCAAAGCCCATAAGCACTCTATGCAGCTCCCTCAACAGCCATCTGCTTGTGTAGCCCCTTTGGGGAATTTAAAGAAGCATGTCTGTCCTCAAGGATGTTTTATTCGATTCTGTGACACTTGCTCTATGCATTCAGTGGTCTCTGCTTGCTggcatgtttgtcttttgtttttacttttcagttcttttctgtctgtgtgtacagCAATGCCTGTGTACATGGCAGATAATCTTCTGGAGCTTTAGCCCATCTAAATGGAGCTGTATGGTTGCATGGGCTCTCTGATACATCCCAATGtatgaagaaggaggagaaaaggAGTGCAGACTGCATGACATCCTACCTAAGTGTGTAGAGAGAGGGCAGTGGTTTGCTTTAACTTCTGTTTTGGAGAAACATTCTGAAGTTGACTTGCAGCTCAGAAGTATTCAGATTACCTGTCTTGTCCCATCCAATTTCTCCCCTCTCATGGCACTATGGCATGAACATGGGTTGTGATTTCAGACATTCCAGAATGTCCTAGCACCAGGTCCATGTTCAGTTTTCTCCTGGCTCTGCAAATCGATTATGATATTTGTTTGATTTAGGAACAGATGTGACGAATCTGTGTATAAATATTACTGAAACAAATTATGCCTGCCCCAGTGTTACACGGAACCACTTGCTGCTTGACATACTGCTTTTCCTTCAGGATTTATCAAATGCTGTCAGCATGTTGGCTTTCTCTGGCCCTCTCAGTCAGGCTTCAGTGTTGACTGCTGAGAAACAGGGCTTCTAAAAGAATGGGCCCGTCAGATAATAGATGGAGTTGagatatatcaatatatatacacatattttttaattcgAGTGATGGTCAGATTGGGTTATGAAgagttttgtttgtcttttcttaAAAGTCaggttttgttttcttattttttcttgctgtatttctgtatgTATAAAAGCTCAGCGGTTCCTCAAAACTCAGCAATTTCTCTATCAAAGCCACAGGGTGTCTCTGCTTTTTTTATTCTACTTTATACTTTCAAATGTCtgtaaaaatactgtaaaaaaagaaGACTGTGTCAGAGGAATGTGTATGTGAGGGTTTAACCAATAGTGTATAAAATTATGGATATAAagcacttaatttttttaagagaTGCCTCCTGAATTGAAGCTCTTGGTGCTGTGAGTCCAAACCACGCAGCTGTTGAACCCTTCTTGACTCTTGGAATGTCTCCGTCTCCGAAGTCTCTAGACTCGTCCCctctctcttccctccctccctcttcaTGTGCCACCTTCCTTTTTTGTTGGACACTCTGTCCCATTTGGATGTTGAGAAGCTGTTATattttgttctcattttttttttaaagaaaaaaaaaactggggaaAAGAGGCATGTGCCTTTGTAAAGACA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09108 TFAP4; transcription factor AP-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251703 lncRNA upstream 11430 17052378 ~ 17055807 (+) True G212541
TU251602 lncRNA upstream 139255 16869758 ~ 16927982 (+) True G212446
TU251605 lncRNA upstream 139868 16923805 ~ 16927369 (+) True G212449
TU251601 lncRNA upstream 152664 16842948 ~ 16914573 (+) True G212445
TU251594 lncRNA upstream 256487 16810311 ~ 16810750 (+) True G212441
TU251750 lncRNA downstream 24481 17110236 ~ 17113156 (+) False srl
TU251769 lncRNA downstream 94039 17179794 ~ 17180253 (+) True G212571
XR_004579348.1 lncRNA downstream 190899 17276654 ~ 17285842 (+) True LOC117598773
TU251783 lncRNA downstream 198528 17284283 ~ 17284486 (+) True G212582
TU251790 lncRNA downstream 210653 17296408 ~ 17296874 (+) True G212589
XM_034309796.1 mRNA upstream 68543 16997366 ~ 16998694 (+) True LOC117595691
XM_034310192.1 mRNA upstream 69585 16995855 ~ 16997652 (+) True LOC113528633
XM_034309795.1 mRNA upstream 95470 16832403 ~ 16971767 (+) False LOC113528175
XM_026917291.2 mRNA upstream 95470 16967041 ~ 16971767 (+) False LOC113528175
XM_034309794.1 mRNA upstream 103288 16832403 ~ 16963949 (+) True LOC113528175
XM_026917225.2 mRNA downstream 1529 17087284 ~ 17112770 (+) True srl
XM_026917226.2 mRNA downstream 1530 17087285 ~ 17112770 (+) False srl
XM_026916268.2 mRNA downstream 233987 17319742 ~ 17342075 (+) True trap1
XM_026916309.2 mRNA downstream 612918 17698673 ~ 17733006 (+) False cenpx
XM_026916308.2 mRNA downstream 612918 17698673 ~ 17730565 (+) True cenpx
TU251142 other upstream 921853 16140330 ~ 16145384 (+) False LOC113527983
TU251011 other upstream 1098478 15918217 ~ 15968759 (+) True G211913
trnar-ucu_8 other upstream 1253906 15813242 ~ 15813331 (+) True trnar-ucu_8
XR_004579399.1 other upstream 3574387 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 4878648 12158706 ~ 12188589 (+) False arhgap17b
TU251743 other downstream 1536 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 1098264 18184019 ~ 18341937 (+) True LOC113528485
TU252614 other downstream 1828971 18914726 ~ 18919872 (+) True smim22
TU252615 other downstream 1828971 18914726 ~ 18919872 (+) False smim22
TU252829 other downstream 2058319 19144074 ~ 19145240 (+) True G213491

Expression Profile