Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026917083.2 |
| length | 928 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 6 |
| gene id | LOC113528497 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 3737460 ~ 3742455 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | biological_process |
| GO:0043065 | positive regulation of apoptotic process | biological_process |
| GO:0007005 | mitochondrion organization | biological_process |
| GO:0097190 | apoptotic signaling pathway | biological_process |
| GO:0046983 | protein dimerization activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU242530 | lncRNA | upstream | 21880 | 3672984 ~ 3715580 (+) | True | G204773 |
| TU242524 | lncRNA | upstream | 76296 | 3633171 ~ 3661164 (+) | False | glyr1 |
| TU242531 | lncRNA | upstream | 87922 | 3648189 ~ 3649538 (+) | True | G204774 |
| TU242550 | lncRNA | upstream | 90785 | 3645763 ~ 3646675 (+) | True | G204790 |
| TU242528 | lncRNA | upstream | 147429 | 3587902 ~ 3590031 (+) | True | G204771 |
| TU242579 | lncRNA | downstream | 34149 | 3776604 ~ 3786578 (+) | True | G204815 |
| TU242596 | lncRNA | downstream | 111041 | 3853496 ~ 3882959 (+) | True | G204832 |
| XR_003402906.2 | lncRNA | downstream | 113599 | 3856054 ~ 3868097 (+) | True | LOC113528035 |
| XR_004579351.1 | lncRNA | downstream | 113599 | 3856054 ~ 3866338 (+) | False | LOC113528035 |
| TU242626 | lncRNA | downstream | 122458 | 3864913 ~ 3869743 (+) | True | G204860 |
| XM_026916693.2 | mRNA | upstream | 3575 | 3723763 ~ 3733885 (+) | True | slc16a6b |
| XM_026916694.2 | mRNA | upstream | 3575 | 3723763 ~ 3733885 (+) | False | slc16a6b |
| XM_026916237.2 | mRNA | upstream | 23378 | 3694729 ~ 3714082 (+) | True | wipi1 |
| XM_034309825.1 | mRNA | upstream | 23378 | 3694729 ~ 3714082 (+) | False | wipi1 |
| XM_026916239.2 | mRNA | upstream | 45093 | 3685478 ~ 3692367 (+) | True | zgc:86896 |
| XM_026916074.2 | mRNA | downstream | 5046 | 3747501 ~ 3756184 (+) | True | LOC113527907 |
| XM_034310038.1 | mRNA | downstream | 167750 | 3910205 ~ 3916855 (+) | True | rnf113a |
| XM_026916872.2 | mRNA | downstream | 167754 | 3910209 ~ 3916855 (+) | False | rnf113a |
| XM_034310066.1 | mRNA | downstream | 192941 | 3935396 ~ 3947545 (+) | False | ddx42 |
| XM_034310068.1 | mRNA | downstream | 192964 | 3935419 ~ 3947545 (+) | False | ddx42 |
| TU242330 | other | upstream | 537327 | 3192712 ~ 3200133 (+) | False | LOC113527909 |
| TU242114 | other | upstream | 724601 | 3003672 ~ 3012859 (+) | False | pyya |
| XR_004579364.1 | other | upstream | 1581611 | 2155599 ~ 2155849 (+) | True | LOC117598829 |
| TU241504 | other | upstream | 1851982 | 1883075 ~ 1885478 (+) | False | ccndx |
| TU241220 | other | upstream | 2146385 | 1561594 ~ 1591075 (+) | False | syt3 |
| TU242670 | other | downstream | 224303 | 3966758 ~ 3986284 (+) | True | limd2 |
| TU242671 | other | downstream | 224303 | 3966758 ~ 3986284 (+) | False | limd2 |
| TU242672 | other | downstream | 224303 | 3966758 ~ 3986284 (+) | False | limd2 |
| TU242673 | other | downstream | 224303 | 3966758 ~ 3986284 (+) | False | limd2 |
| trnae-cuc_26 | other | downstream | 228724 | 3971179 ~ 3971250 (+) | True | trnae-cuc_26 |
