RNA id: XM_026917087.2


Basic Information

Item Value
RNA id XM_026917087.2
length 1126
RNA type mRNA
GC content 0.44
exon number 5
gene id syce2
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13083066 ~ 13094680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGAGTCGATGCTTTAGCGTGATTCTGCGCGCGTGCGGATTCTGCGAGGCCGTTGGGAAATGTCTATTTAACGGCAACTGTTTGTAAACGCAGTTAAACTACAATTACAAGCAAATATATCGTGGAGGTTTAATCATTTTGGCCATGGCGCACCACTTCTTTGGACATCCTGGTTCTGCTACATTTCACTCAACACCTAAAGCCACTCATCACCGTGTGTCAGCAAAGGTGTTAGAAGAGGGTCATGGGTGTAGTTTAGACCACGACTCAACTGGTGAAACACTGCCATTTGTAACCCTGGATGATAGCCATGAGCAGCAAAGcgAGGATTCAGGCATTAATGTCTCACACAGCAGTTCACCAATAAACGAGGTGGATGAGGGTGTTGTCTCCACCCCTAGTAACACAAGAATAGATGAAATTGGGAAGAAAGCACAAGACCTTATAGAGAGGATCAACCAGAGCCGGGCAATGGACCAGAAACTCATGAACAGCTTTGAGGAGAAGCTAATGAAGAAGgTGAGTGAGATGTGCCAGCAGGTGAAGGAGCAGATGTTTGAGTATTATGAGAAACACAGCCGAGGGATGGAGATAAAGCTCACTGAGCTCACAGAAGTGTTGGAGCGCAGCAGTCAGCTCAGCATGGAGCTCCAGGGAGCCAGCCATACACTGGCAGCCATTAACAAAGGTCTGCAGCAAACCCCGGGCCAGTAgatacaaatcacacacacacaaacattgtaGTGAATACAATACTTCCATAGCACCAGACATGTGACAGCCAAAACAAAGTAGTTGAATTTGTTGATGTAATAGAAATACCTCATTATAAAGGCAGGGTGACTGTTTGTACTTGTTTCATACTTGCATGATTCCCACTCAGTGGTAGCAAGATGCGAATAATTTCCCATCATCCAACTTACAAAGAGTGTAGTATGTGATACTGTTTAAAGAGGGAGGAAGAATAGCAGGAACGTTGAACTGTATTAAAAGAATGAATGTAAAATTGAATTCAAGAGACTCCATCAGTGGAGCAACAGAAagattacatttaaaacaaacatgttCTTCAGACAGTGCTATAAGGAAGACTCAGAAGATGTATTAGTCCACCTTGTGTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249234 lncRNA upstream 43020 13044990 ~ 13045833 (+) True G210384
TU249018 lncRNA upstream 267569 12821076 ~ 12821284 (+) True G210209
TU248969 lncRNA upstream 308717 12779249 ~ 12780136 (+) True G210160
TU248885 lncRNA upstream 540350 12546433 ~ 12548503 (+) True G210086
TU248698 lncRNA upstream 707867 12378946 ~ 12380986 (+) True G209945
TU249423 lncRNA downstream 271006 13365684 ~ 13365893 (+) True G210532
TU249525 lncRNA downstream 350070 13444748 ~ 13445227 (+) False znf653
TU249558 lncRNA downstream 365301 13459979 ~ 13460490 (+) True G210655
TU249616 lncRNA downstream 567496 13662174 ~ 13663501 (+) True G210698
TU249611 lncRNA downstream 570838 13665516 ~ 13669551 (+) True G210694
XM_026916004.2 mRNA upstream 10180 13065751 ~ 13078673 (+) True farsa
XM_034310281.1 mRNA upstream 46547 13028820 ~ 13042306 (+) False ptger1b
XM_026916370.2 mRNA downstream 15355 13110033 ~ 13142377 (+) True LOC113528074
XM_034310204.1 mRNA downstream 52625 13147303 ~ 13169715 (+) True LOC113528311
XM_026916798.2 mRNA downstream 52625 13147303 ~ 13169715 (+) False LOC113528311
XM_026916086.2 mRNA downstream 179946 13274624 ~ 13313578 (+) True plppr2a
XM_026916084.2 mRNA downstream 179946 13274624 ~ 13313578 (+) False plppr2a
XR_003402925.2 other upstream 900264 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 1511030 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 1551688 11537047 ~ 11537165 (+) True LOC113528662
TU247338 other upstream 2670972 10372415 ~ 10417881 (+) False G208781
XR_004579399.1 other downstream 381150 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 2718564 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 2823539 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 3045652 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 3992613 17087291 ~ 17109275 (+) False srl

Expression Profile