RNA id: XM_026917090.2


Basic Information

Item Value
RNA id XM_026917090.2
length 2602
RNA type mRNA
GC content 0.44
exon number 2
gene id nfil3-6
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13223244 ~ 13226875 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATAGAGCGCGTCCTCGACTGAACTCCACATGCAAAGCTACAAATAGGAGCTGCGGCGTTCAAACGGAGCACAAACGATCCAGGAAAGGTAGCAGCACTGCACATGACATTCTGTCACAATTTACACCGGATGACACATTTAACATCTTAAAACcttaaatccattaaaaaaaaaaaaaactgccttcACTTGGATGCAAACGCTTTTTGCATTGACCTCGGATTTTCCCTGGCCAGAACTCAGGAGATCATTTTAAAGGTGGCGCTGTTATACAAACAAAGCTGAAGCTGACCtaaattaaaaaggaaactTGTGTGACTTGACAGTTTTATTTCAAGTATGTTTGAAGAGGGATCTCAAGAAATGAGAGAGCAGAGTGCGGGGGTGCTGCCAGCTGTGGAGGCTGTGAGCACAGGAATGCTGGGATTAGATGTGGCAACCCACAGCAGCACAATGTCTTTCACAGAGGAGGCTGTCTCCATCCTAACATCGAGCAGTCTGCTGGCTCGCTCATTGTTAGGCCGCCCATCAGCGTTGAAACGCAAAGAGGTGACCCAGGGTGGAGGCACACTGAGGCGCAAGCGTGAGTTCATCCCCCAGGAGAAGAAGGATGAAGGGTACTGGGACAAGCGCAAGAAGAACAACGAAGCAGCCAAGCGCTCACGGGAGAAGCGCCGTGTCAATGACATGGTGCTAGAGAACCGTGTTCTTGGGCTGCTTGAGGAGAACGCAAGGCTCAGAGCAGAACTATTAGCACTCAAATACCGCTTTGGCTTGGTCAAAGAACCCTCGAATGCGGCCATCCTTCCGTTAACCACCACAGCACCGTGCGTTCCTCAGCCTGCCAGCTCACATTATTACCTTCTCCGTGAAGATGGGCTTCACTCCAATACTGCTGTGGTGCCCCATCCAAATTCCACTCAGGCTGTGTTCCATGTGGGACGAGGTATCAGGGAGAATGGCAGCATGTCAGAGGACTCAGGCTTCTCAACTCCTGGAGGCTCCAGTGTTGGAAGTCCTGTATTTTTTGAGGACCGGCTGAGCGATCATGGCAAACTGTCTCCAAACAGATCTGATGAGTTGGGCTGTGAATATCACCACTCTCCTGCCCCTGACACTCTTGTGGCACAGGTCTCAACAGGGCACACCTCCACAGCATCTGGAAATGGGGACTCAGTGGAAGGTATGAAGAGTCTCCCACATAAATTACGTTTCAAGTGTCCAGGCAGCAGCGATAGCGAGAACTCCAGTGAAAGACGCAGTCCTGTGCAGCTCACAGGAGGACGGGAAACCACCAGAAATCATTTCCCATTTGGCATGGGTGAAGGGGCTCGGCTCTGGTCACAGCATGAAGGGGACGAATCTCGAAAAATGCTCCCTCATCATAATGGTGGCCCGATGGGTGGTTGCAGCAGTGGTCAGCCACATGGGAACCACAGCGAGGCATATTACCACGCTGAGAACAGCATGCTCAAATCTCAGCTTAGCTCCCTTGGGGAGGAAGTGGCACAGCTCAAGAAGCTCTTCTCCGAGCAGCTCTCCAAAATGAACTAAAGATCTCAGCTCTCTAGAACAGACTGAATACAGGGAGCTTGGTCTTTCTGAGCCAGACCCAGCCATAAACAATAAACCATAAGATTTTTATTCAGAACAGTGTTGAAACTGAATTTTAGGGCACTGTCATGACTCTGGTAGTAGCCAGTAGACTCTTAGACTATCCTTCAGTTTCTTTAACTAGTTTCATGACAGGAAGAGTAAGTAAGTAGGTAAGGGTTGTGTCAGATGGAGATACAGTATGGATGTCACTGTATGTGCTGCAACTCCTCACACCAGGGAGATaacatttctctctctaccAGCAGGCTCTTACCTATGGCACTTCAGTCACTCTACCCAAACAGACATTACTGCTAGACTCCAGTGGGTCACCAAACCAAAGTGTGTCAgtcatatttaacacaacattCCCATATTCACTGTCAACTCTGCTGTTATATGTCAGATTTCTCAATTTGAAAATGCATAGGAAATGAATCTGGTGCTGATTGTGTTTACAGGTAAATATTCCATAACAGTTTGTCTTATAGTTTAACTCCATTACACGTCATGCAGATTTGAAAAGGGAAGGcataaatgtcaaaaaaagataaaagctttcacagaatggagaaaaaatttAGGaaagcccaaaaaaaaaataagtctgGAGTATTTTTGTTGTCATTATTTAAGATTGGTAAAATTGTaacagattaataataataataataataataataataataataataataatacatatttgtATATCACCTTTCTTAAACTCAATGTCACTACATAAGGcatcaataaaaatacaataagaaataaaacattttgctgaaatgcaCAATATCATAGTCTCATAGCCCAAGACATCACATAAATGCCTTTTCCTGCCTTTTCCCCCTTTATACTGCTTGTTACTGCCATCTGAGATCAGGATTGTGTGTAACTAGTAACTAAAACACTGTAATGTGTACAATGGTGGTAAAAACCTGTGTTGccttgtgtatttatgtgtgttcagtgtttttatatGTGAATAAATATTTGACAACA

Function

GO: NA

KEGG:

id description
K12114 VRI; vrille

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249332 lncRNA downstream 51178 13171841 ~ 13172066 (-) True G210461
TU249304 lncRNA downstream 127507 13095520 ~ 13095737 (-) True G210436
TU249303 lncRNA downstream 127767 13095244 ~ 13095477 (-) True G210435
TU249295 lncRNA downstream 144299 13077999 ~ 13078945 (-) True G210427
TU249275 lncRNA downstream 188392 13034128 ~ 13034852 (-) True G210412
TU249463 lncRNA upstream 83658 13310533 ~ 13354585 (-) True G210570
XR_003402958.2 lncRNA upstream 142579 13369454 ~ 13372938 (-) True LOC113528601
TU249469 lncRNA upstream 163741 13390616 ~ 13395410 (-) False elof1
TU249504 lncRNA upstream 178264 13405139 ~ 13405357 (-) True G210607
TU249543 lncRNA upstream 218861 13445736 ~ 13446438 (-) True G210640
XM_026916922.2 mRNA downstream 3222 13210369 ~ 13220022 (-) False nfil3-2
XM_026916923.2 mRNA downstream 4171 13210369 ~ 13219073 (-) True nfil3-2
XM_026917298.2 mRNA downstream 118406 13096910 ~ 13104838 (-) False gcdhb
XM_026917297.2 mRNA downstream 118415 13096259 ~ 13104829 (-) True gcdhb
XM_026916474.2 mRNA downstream 160502 13047319 ~ 13062742 (-) True ilf3b
XM_026917193.2 mRNA upstream 14975 13241850 ~ 13268174 (-) True LOC113528569
XM_026916221.2 mRNA upstream 163741 13390616 ~ 13395457 (-) True elof1
XM_026917009.2 mRNA upstream 205352 13432227 ~ 13435356 (-) True swsap1
XM_026916843.2 mRNA upstream 268111 13494986 ~ 13498163 (-) True gadd45gip1
XM_026916077.2 mRNA upstream 435288 13662163 ~ 13669491 (-) True nme4
trnas-aga_12 other downstream 396705 12826458 ~ 12826539 (-) True trnas-aga_12
XR_004579428.1 other downstream 664031 12548829 ~ 12559213 (-) False tom1
XR_004579330.1 other upstream 168591 13395466 ~ 13399225 (-) True LOC117598755
XR_003402937.2 other upstream 777294 14004169 ~ 14006512 (-) False LOC113528401
XR_003402952.2 other upstream 793373 14020248 ~ 14029641 (-) False pecam1
XR_004579449.1 other upstream 1260946 14487821 ~ 14490775 (-) True LOC117599009
TU250141 other upstream 1293402 14520277 ~ 14520975 (-) True G211151

Expression Profile