RNA id: XM_026917093.2


Basic Information

Item Value
RNA id XM_026917093.2
length 5202
RNA type mRNA
GC content 0.44
exon number 12
gene id slc6a16a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6980540 ~ 7002180 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcgcacgcggTCCCGTTAGTGGAGCTTCAATGAGCGGTCAGTGAAGCGCACTAGGGCTTCGGTTTCACTACAGAACAGAGTTATTAGTGAGTTTGGGTAGAAACCCGGCAGAAACGTGGCGTGAGGATTAAACGTGTGGTCTGTTCAGAGCACGGTGACTTCTGCGTGTTCAGGCAACACAGAGAGAACCTGAGACAGCACGAAGAAAATAAAGCAAGCAAGTCAGAGGGACAGCTCCACCCCAcctcctcccaaaaaaaaaacttcacaagAGATGGAGAAGCCCCCACTGCCAAGCGATGAAGATGTTCCTGGGATGGCCGACAATCAATCAGCGATGACTCTGGTGTCAGATGAAGGGGCGGGGCCTGAAGGAGGGGTGGGGCAGGGGGAGGATCGTCCTGCATGGGACAGTAAGCTACAGTACGTCCTTGCCCAGGTGGGCTTCAGCGTCGGGCTCGGCAACGTGTGGCGCTTCCCATATCTCTGTCACCAAAACGGAGGAGGAGCATTCCTGTTGCTGTatgtgatgctgctgctgctgattggAGTTCCTCTCTTTTTCATGGAGCTGGCCGCGGGTCAGAATATTCGGCAGGGCAGCATCGGTGTCTGGAAACACATCTCGCCACGCCTCGCTGGCATCGGCTACTCCAGCTGTGTGgtttgtTTCTTTATGGCTCTGTACTACAATGTGATTATTGCCTGGGCTCTGTTTTACTTGGGGAGTTCCTTCCAGTACccattgccatggcaacagtgtCCTATAGAACCTGGCGGTAACCAGACAGtgaaGGAGTGTGCTGCCAGCTCTCCCACCTCATATTTCTGGTTCCGTAAGGCTCTTGATATCTCTGATTCAATTGATCAATCTGGAGAGTTTAATCCTGTCATAACCGGTTGCCTGCTTGCGGCTTGGGCTATAGTCTGTCTTGCCATGATCAAGGGCATCAAGTCCTCAGCCAAGGTGATGTACTTCTCCTCTATTTTCCCATATGCtgtgcttttctgttttctcatcaGAGGTCTGATGCTGGATGGAGCCTTCGAAGGACTCACCTACATGTTCTTTCCAAAATTAGAGATCTGGGGTGAGGTGCAGGTGTGGCGGCAAGCTGCCACTCAGGTGTTCTTTGCTCTCGGTTTGGGCTACGGATCTGTGATTGCGTACTCCTCCTACAACCCAATCAACAACAACTGCCACCGGGACGCCCTCATGGTTTCCGCCATCAACTTCATGACCTCAGTCCTGGCCTCGCTCGTTGTCTTCACGGTCCTCGGCTTCCGAGCCAAGAACATTGCCCTGGAGTGTGTTGTAGAGAATGTGAGTAAAATGTCAGAGATAGCAGCTTTAGGCAAAGCTCAGCACTGGTGGCCGTGGTTCAATATGTCCGACCCCAGATCCGTGGAACTAAAGGATTACCGGGAGTGGTACAACCATTATGGGAGCATACTAGGCTCAAACATCACCGATTGTGACCTGGAGAGAGAAATGAACAAGGGAGTGGAAGGGACTGGTTTGGCGTTTATAGCATTCACAGAGGCCATGGCGCTGTTCCCGGCCAGTCCGTTCTGGTCGGCGTTGTTTTTCCTCATGCTCCTGAATCTGGGTCTGTCCACCATGTTCGGCACCATGCAGGGCATCCTCACGCCACTCATGGACAACTTTAAACTGCTGGGCCGCCACAAGACACTGCtcactgTGATAAGCTGTATCCTGGGCTTCCTGATTGGTCTGCTCTTCACTCAGCGCAGCGGGAACTACTTTGTGACCATGTTCGATGATTATTCTGCCACTTTGCCGCTGATGATCGTTGTCATCTTTGAGACGATCAGTGTGGCATGGATCTACGGTGCTGATCGGTTTCTGGATGATATAGAGGTGATGTTGAAATGGCGCCCTCCAGCGATCTATAAGTACATGTGGAAGTATGTGTGTCTGCTGGCTATGGTGGGTCTGCTGACTGCTAGCCTGCTGCGCATGTTCTTCAAGTGGCCCACTTACACAGCATGGGACCACACCACGGGGTCTGAGAGCAGCCTGGGATACCCGGGTTGGGCCTTGGTGATGCTCGCGTTGCTCATCACCGTCGCCTCTCTTCCAGTGCCTGCGGGCTATGTACATTCCCTTCTCACCCATAAAAGTGGCCAATCACAGGCAGAGGGAGCGGCTGAGCATCACAGAGAGCGATACTCCAAATGTAGTACCACCGAGCCAGAACTCAACAACCATCACGCTCCTCTGGATGAGGACAGCAGCCGACCCCGGACCACCTTCCTGCCCGTGGCTGCAGATCACTACAGGCTTCTCTCACAACAGGAAGATggagatgaggaggaggatgacaCAGAATTGTGATAAAGGcagacaagaaaaaaacagacagttgAAATAGTGTACTGGAGAAGCGATTGGACAAGAAATGACTGAACGGGATGCTGGAGTGTCTACCAGACAGTTGCCAAGGCGACTGCgcttacagtgtaattttaaaGATTAGGTATACAGAGCTAGTAAATGATAAACTAGGACTCTGTGAATTAGAACAAAATCTCAAAGCTTGAAAAGAATCAACACAATCCACGTTATCATGAGTTAGAAACCGAACTGGAGTTGGATGTAGTGATGGCACCCTTGATACTGAAGCACTGAGGCGAGTGTCAAAACAGCAATAACTTAAACACTATATCCGTTATTGATTTGTTCTGCTGTTATCACATCACCAGTGATGATCGATACTTCGTTCTGGCACAAGCACATGACTGCTTTGGAAACTGATtcaaaagaaaagcaaactCTGGCACGCGTTTTGAGTGTTGTTCAAGGAAGTAGTGTATTTGAGTGAATTAGTGATATATTTTGTAGTTATGGAACCAACAAAGAAACAAGGGTGTTCTGAATTTTTTGGGAAAAACTCGTAGCAGTAAATCTCGTATCAGGTAATCTCTCACGTTTCACAGTTCAGTTAATCCTACATGAGGCTTGTCTATGAACTAATAGGTGAGGAACTTGGGCTGGGTTcaatgtaaatgaataagtatgtttgtgtttctcaACAAGGTTTATTGTAAATAGATGTAATCTAACATAGAAGTATGCTATaagcacatttattttctttatacaggattattattagtgttatcaGTTgcctttattatttataaaaataatattgcaATACTTTTTTCAAAGCACTGGAATGCACCGATTTGTTAGCTGGAAGCCCAAAACCTAGCACCTAGTAGATTACTGTCTGTACTGGAAGTCCTGCTTTTGATCCCAAGATGCCACTAGCGTGCATTGTGCTGAAAAGCTTCAAGTAATGAGCTCTTTAACAAAACAGTTAGGAGGAAGGCTTCATTTTGCCATCGCTAGCTGgatgtattgtttttttgtgtacGCTTATGTAGTTTACGTTGTTCACCATTAGCTGTGATGACTAGATCTTCTGCTAGACACCACATGCAACTTACATTAGCCAGGGTTCCTCTGCAGGTCATAAATATCTGAAACACTATGACATTTAAAGGCGATATTGGAGCtgaaaaaatgtggaaattgAACAGTCTTAGAAAAGGCAAATACGTATATTGTTGTCAAATGCATGTAGATTCAAGACACTAAGGTTCAAAATCCATTGTCTTTAGACTTTCACTTCTGCATCAATACAGCCTTCCTAAAGCATAttcaatgttattattatagtattattataCCCTTTATGATACAGTTATCTTTTAGAAATAGCAAGAAACAgatcagagaaaaataaaattcctAACAAAATCAAAAGGgtcctttggtgcttggacccctaaaaatCAATCTggaaaaagtcttttttttttttaatatgaatcaAGGGTCAAGACTCCTTTTATAAGCAAAAGCATCGGTGTTAAGTTACGCTGTGGGCGCATCCCCACCACTTTTTGAGATTATAGTCTGTTAAATCTTTTATAAGAGCTTGTGGCAGAACCTGatccaaatgtttttttaaaaatactgcaTAAGTCTAATGGTGTTAGTTACTGAAAGTGGCTTCTGTAATAAAACTTGAACAGGAACCAGTGCCGCAAACTCCACCCCCATGTGCGTTTGTGTCTTGGTGGTGTTATGCAGGTACCAAAAACCATACTGTATCAGTACTCTGTGATCAGTACTGGGTACTCTATACGTACTGTGCCAATGGACAAAGCAGTTTTAGCTTTGTGTTGCCAAAGGTAACTGTCATTTTTACAGTTGTAAAAGGCTTTTAAGGTTTAACGTGCGAATGCAATACTAGAGACGCATGAACTGCAAGAGAAAATCACCCTTAAACAATTTTATCCTACTCGTTTTTGATTGAAATGTTGCAGGTTATGCAAGTCAGCTCGTGCCTAATACAATCACCAAGGGCGAATCCAAGGATGAATCCCAGAAAGCACTGTAGCAAAAATTTCTGCATGTTGTTTAACCCCTGTTTGTACAAATCCTGATAAAAATATCCAACTCTACACCAGCTGAGTTAAAACTGGTAGCTGCTAAGCACAGGATTGAGAATAGAGCCAAGAAGTGTGCTCAGTGTGTATGATCattgtgaacacacaccacactcacatTCCTGTATGATGAGCACACACAACCTGAAACAGCAAGAGGGATACCGTATTACTAGCAGTGGGTCTAATGTGTGGTTTAATGTACATCAGTAAATGACTGTGAAGCTACTTttctaatataaaataaaattttaaataaatcaaggaTACATTTTATTATAGCTTTAATAAAAATCCATCAGAGAAAAGTGCAGGCACACTAACATCCACATAGGAAAATGGGAACTGGTTATGTAATGACTCCTGGATGCCACGTCATATCCATAAAGCTGtctcaaaagtgaaaaagttgTGGTTtatttgtgggatttttttttttttgggttattGAAAGTCACACATAGACTCTTATCttgtatatgacaaataaaatgtacatagaAGTTGCCCATGAAGTCTTTCATCTCATttttccacactttttttttttaatctgtgaaaCTTAAAAGTAGATCGAGGAGCTTCTGGTGCCAGcttacaaaaataacaaaataatggCCTAATAAACACATTAGGTGTATGAATTATATCCTCCATGTTCATGAGATATATATGAATACATGCAAAGTGTTAAAACTGTATGCATCATCATACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245005 lncRNA downstream 152394 6826368 ~ 6828146 (-) True G206923
TU245006 lncRNA downstream 154780 6824896 ~ 6825760 (-) True G206924
TU244981 lncRNA downstream 332726 6646097 ~ 6647814 (-) False stat5a
TU244696 lncRNA downstream 634177 6273816 ~ 6346363 (-) True G206649
TU244662 lncRNA downstream 776344 6203312 ~ 6204196 (-) True G206628
TU245188 lncRNA upstream 100068 7102248 ~ 7102389 (-) True G207057
TU245372 lncRNA upstream 174352 7176532 ~ 7176755 (-) True G207198
TU245396 lncRNA upstream 225205 7227385 ~ 7227664 (-) True G207221
TU245401 lncRNA upstream 235493 7237673 ~ 7237881 (-) True G207226
TU245403 lncRNA upstream 238061 7240241 ~ 7240907 (-) True G207227
XM_026917020.2 mRNA downstream 2407 6954113 ~ 6978133 (-) True slc17a7a
XM_034310098.1 mRNA downstream 36512 6937554 ~ 6944028 (-) True zgc:55558
XM_034310126.1 mRNA downstream 63728 6899007 ~ 6916812 (-) False gys1
XM_026917287.2 mRNA upstream 56789 7058969 ~ 7067348 (-) True kcnj12b
XM_026917288.2 mRNA upstream 56789 7058969 ~ 7062434 (-) False kcnj12b
XM_034309660.1 mRNA upstream 56789 7058969 ~ 7062425 (-) False kcnj12b
XM_034309697.1 mRNA upstream 133157 7135337 ~ 7146912 (-) False LOC113528017
XM_034309696.1 mRNA upstream 133157 7135337 ~ 7146912 (-) False LOC113528017
TU244626 other downstream 785544 6126910 ~ 6194996 (-) True G206604
XR_004579347.1 other downstream 1019490 5953733 ~ 5961050 (-) False LOC113528542
XR_004579346.1 other downstream 1019490 5953733 ~ 5961050 (-) True LOC113528542
XR_004579400.1 other downstream 1029543 5940862 ~ 5950997 (-) False retsat
TU244224 other downstream 1139063 5841137 ~ 5841477 (-) True G206282
trnac-gca_16 other upstream 268726 7270906 ~ 7270977 (-) True trnac-gca_16
trnac-gca_17 other upstream 270075 7272255 ~ 7272326 (-) True trnac-gca_17
trnac-gca_19 other upstream 270877 7273057 ~ 7273128 (-) True trnac-gca_19
trnac-gca_20 other upstream 272126 7274306 ~ 7274377 (-) True trnac-gca_20
TU245410 other upstream 316423 7318603 ~ 7321962 (-) True G207231

Expression Profile