RNA id: XM_026917098.2


Basic Information

Item Value
RNA id XM_026917098.2
length 2941
RNA type mRNA
GC content 0.46
exon number 3
gene id sox8a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16326885 ~ 16330539 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAGGCTTTATTACATTTGACTGCGAATAGTGCTCCACCAATAAGAATATAGTATGGCAGTGTAGTCCACCAATGAGAGGTGAGAAGAGGCGTGACACGCTCCAACTTCGCGCAAAAGTCTTTTTAGCGACTGTCACCGAGTTGCACAACGAGATCTGAGTTTCCAACAGCGCGTTAAAGCATCGACACTATCCACGCGTGAGGGATACGCGTAAGATTTCACCGACATCAAGAAGGATTTTGACCAGCGGGATCCAGAAATGACCGAGGAGCGCGACAAGTCTATGGCGGACGCCCCGTGCAGTCCGACAGGTACTTCCAGCTCGGCGTCTCAGGACGAATCGGATTCGGACGCGCCCTCTTCGCCGGCTGGATCGGACAGCCACGGATTGCTCCACTCGTCTAGCAAAAAAATGGACGAAGACGAAGATGACAGGTTCCCGGCGTGTATCCGGGACGCCGTTTCCCAGGTGCTGAAAGGCTACGACTGGTCTCTGGTGCCGATGCCCGCGCGAGCCAACGGCACACTCAAGAGCAAGCCGCACGTGAAGAGGCCCATGAACGCGTTTATGGTGTGGGCGCAGGCGGCGCGCAGAAAACTGGCCGATCAGTACCCTCACCTCCATAACGCCGAGCTCAGCAAAACCCTGGGCAAACTCTGGCGCTTGTTATCAGAGAATGAAAAGCGGCCCTTTGTAGAGGAGGCCGAGAGACTGAGGGTACAGCACAAGAAGGATCACCCTGACTATAAGTACCAGCCGAGGCGTAGGAAGAGTGTGAAGCCAGGACAAAGTGACTCTGACTCTGGTGCCGAGCTAAGCCATCACATGTACAAATCCGAGCCAGGCATGGGTGGCCTGGCAGGATTAGCTGATCATCATCACACAGACCATCCAGGTCAGCCCCATggaccaccaacaccaccaacaactcCTAAAACCGACCTTCACCATGGTCATGGTGGAAAGCAAGATATGAAGAATGAAGGCCGGCGGCTCCTGGACACTGGGCGTCAGAACATTGACTTCAGCAATGTAGACATATCCGAGCTCAGTACGGACGTCATGAGCAACATGGAGGCCTTTGATGTGCGTGAGTTCGATCAGTACCTTCCTGTCAATGGGCACTCAGTAGCCTCCTCCATGGTTTCGGAACCCAACCCTGGTGTTTACGCTGCTTCGTACAGCCACTCTGGGGCCAGTGGGGCTTCCTGGAGCCGCAAAGCagccctctcctcctcttccacctCTGCCTCTTCCTCTGGATCCAGTGACATGGGTCAGCACAGACCACACATCAAAACAGAGCAGCTGAGCCCGAGTCACTACAGTGAGCCCTCTCACAACTCACCCTCTCACTCTGACTATGGCTCCTATGGTGCTCAGAGCTGCACTACTTCAACTGCTCCGTTCCCAAGCTCTCCATGCGACTATACAGACCTGCAAAGCCCTGGCTACTACAGTCCATATTCCAGCTATGCCTCCAGCCTTTACCAGTACCCCTACTTCCACTCATCACGGAGGCCCTATGGAGGCACCATTCTCAATAGCTTGTCTATTCCACCTTCCCACAGCCCCACTGCGAACTGGGAGCAACCGATTTATACCACTCTATCGAGGCCTTGATAAGGTAGTGTAACATTGTCTGTACTGTGGAAGCACTTCTGAAGGAATAGCAGTAGCCAAGACAAGAAGGGGTATGATTGCTCATTCAAgggtagaagaagaagaaaaagtgccTGCTGAATTTGCCCACCCCCAAACAAACTCTTATCTATGGACGGCGCATAGCCTGATAGCGCTAGTACAGCAAGCAGAAATCCTCTGTGAGGACCACCTGTCACTGTTTCTCTCCATTCCCCACATATAGGCCTACTCTtggaattgtatttttttaatgactgagTATATGCCACTGATTTGTGTAGGAGAGAAGCACATGAGTATGCCAAATCCGTTTAAGAAGCAGATGGAgaaaacagatacacacatgcactgggaccaattattttaaaaatatacaccaCCAGAAAGAGTCAACTATAAAAGTTCTCTTGGTCACCGACTCCTTAAttctaataaattttttttccccttttttggTTAGAGATATTCCATATCTATTTATGTTAATTGTTCTCTCATTCTTTAAgttgtatatttgtataaatcCTTTTTGGGGGTTGTGAAAGGTGGGGGATGAAAATATTGAATTTTGTGCTATTTTACAATCATTTGTATTATTGTAGCATATAGCATTCCtggaaagaaacaaaacacacacacacacgcacacatttccATTCCATATGATTTAAATGAAGCAAAAGATGAGGCAAAAGAGGCCAATATATTACCACGTGGTGCAACAGGCGCCTGGGGTAATTGCGTTAGGCGTGTACAAACCAAATTAGCCTTATGcagtttgtagttttttttttttttactacttttcAATCTTAATCCAAACCCCTGAAAAttatatgataaaataaataacaaatttgctGACCTTTTATTTTCATGGGTAATGAAAACACGCATGTACACCAGAAATAAGCATCTTTTTATATCAGATGTTTTGGCATTTAAAAAACTACAGAGCTGCCatatataattttcataatGTGATTATGTTGATTGACTTTCATTATGTTGAATCATTTGTTGAATTAACATGTTCATCCCTCTGTctcatcatttgtttttaacctgttatttcagaaatgtttgcCGGTATCATAGTGACATTTGAGACTCATATCGTAATTTTTCCTAAACATGTTGGTTTATTCCGGCTGTGAAAAGCCACACAGTGTTCTTTTACTTTACTGTTGTCATTTTTGAAAAGTTGGCTGTGAATTTTATTCTGTGTTAACAAAGCTAACCTTAATTTCAGGCCCtatctgtgaaaaaaacaataaacctTCTTTTTCCCTGAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251176 lncRNA downstream 173315 16151738 ~ 16153570 (-) False LOC113528178
TU251177 lncRNA downstream 173371 16151105 ~ 16153514 (-) False LOC113528178
TU251126 lncRNA downstream 286486 16039756 ~ 16040399 (-) True G212018
TU251124 lncRNA downstream 289568 16037116 ~ 16037317 (-) True G212016
TU251114 lncRNA downstream 384376 15940586 ~ 15942509 (-) True G212006
XR_003402922.2 lncRNA upstream 123021 16453560 ~ 16455847 (-) True LOC113528275
TU251459 lncRNA upstream 148352 16478891 ~ 16497232 (-) True G212319
TU251473 lncRNA upstream 242581 16573120 ~ 16573567 (-) False LOC113528039
TU251546 lncRNA upstream 350645 16681184 ~ 16690337 (-) True G212395
TU251514 lncRNA upstream 430693 16761232 ~ 16764671 (-) True LOC113527915
XM_026916252.2 mRNA downstream 99443 16225651 ~ 16227442 (-) True LOC113528022
XM_034310215.1 mRNA downstream 122894 16151075 ~ 16203991 (-) False LOC113528178
XM_034310214.1 mRNA downstream 122894 16151075 ~ 16203991 (-) True LOC113528178
XM_034310216.1 mRNA downstream 123246 16151075 ~ 16203639 (-) False LOC113528178
XM_026916317.2 mRNA downstream 709501 15607444 ~ 15617384 (-) True LOC113528053
XM_026916944.2 mRNA upstream 170582 16501121 ~ 16537254 (-) True LOC113528411
XM_026916166.2 mRNA upstream 207842 16538381 ~ 16545640 (-) True LOC113527963
XM_026916292.2 mRNA upstream 242006 16572545 ~ 16598688 (-) True LOC113528039
XM_026916293.2 mRNA upstream 284552 16615091 ~ 16634737 (-) True LOC113528041
XM_034310191.1 mRNA upstream 340606 16671145 ~ 16688599 (-) True LOC117595684
XR_003402969.1 other downstream 854973 15471777 ~ 15471912 (-) True LOC113528654
XR_004579411.1 other downstream 1636753 14678750 ~ 14690132 (-) False LOC113528445
TU250141 other downstream 1805910 14520277 ~ 14520975 (-) True G211151
XR_004579449.1 other downstream 1836110 14487821 ~ 14490775 (-) True LOC117599009
XR_003402952.2 other downstream 2297244 14020248 ~ 14029641 (-) False pecam1
XR_004579443.1 other upstream 962312 17292851 ~ 17319719 (-) False LOC113528519
XR_004579442.1 other upstream 962312 17292851 ~ 17319719 (-) False LOC113528519
XR_004579437.1 other upstream 962312 17292851 ~ 17319719 (-) False LOC113528519
XR_004579441.1 other upstream 962312 17292851 ~ 17319719 (-) False LOC113528519
XR_004579439.1 other upstream 962312 17292851 ~ 17319719 (-) False LOC113528519

Expression Profile