RNA id: XM_026917101.2


Basic Information

Item Value
RNA id XM_026917101.2
length 3249
RNA type mRNA
GC content 0.49
exon number 20
gene id gaa
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12033886 ~ 12045504 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAAGCGGCTGCGATTCGGCCAGAATCTGCCATCATGTGCAAGATGTAACGTCAAAGTAACAGTTCTGCTCAGGCTTTTCGTCATGATTTCTCTCATGCACACTTTGtCATGGTAGATTCCTAGCAGATCACTTGAGTTACACATGTCTGAGAAGCCTGAAGATCCTGTTTGAATGACCATGAATCCGTGTTGGCTTCCACATTCAGCTTATGTTCTTTTAACTCTGGCCCTATCATGCATATTGATTAGCCAGTTGTATCTTCACCAAGCATCAGTTGTAAGAGTGCCATCATCTCCAGAGTTAACAACAATTAAAGTGCCCAAGACCAGAGATCTCTTCAAGAACACCACCAGGAACTtttcaaataatataaattcaAGTGAATTACCAAACCACTCCACTGTTGCTGGAAGGGACTGCGGTCTTCCCGTGGAGAAGCGGTTTGATTGTGCCCGTGATCGAGCCGTCACTCGGGCGGAGTGTGAGGAACGAGGCTGTTGCTACTTGCCCCTACCCCAGTCTGAGTACAGTGGGCCGCCATGGTGCTTCTACCCTGCATCATATCCTGGCTACAGAATGGGACCGCTTTCTCCCACACCTAGGGGTCAGTCAGCCACACTTACTCGCGTCACTCCTTCTTACCTGCCCCGAGACATCTCCACTCTGCAGCTAGAAGTGATGGAGGAGGAAGCGGGCCGCTTACACCTTACTctgAAGGATCCCTCGTCAACTCGATATGAAGTTCCCTTTGTTGCAGTGCCATCCAGTACGTACAGACGTACAGACACGCAAGCTTTCCTCTATGATGTGGAATTTCAGCCAGACCCGTTCGGCTTTGTGGTTCGTCGCAGATCCAATGGCCGAGTGCTACTGAACACCACCGTAGCACCGCTCCTGTTTGCAGACCAGTACCTCCAGCTCTCCACCTCTCTGGCATCTACTTTCATCTCTGGATTTGGcgagcactacacacacctgaCTCTGGATCTCAACTGGACCTCTGTCACTCTGTGGAACAGGGATATGGCACCACATAGCGATGCCAACCTTTACGGCTCCCATCCATTCTGCTTAGTTCAGGAGGGTGATGGTCAGGCTCATGGCATCTTCCTTCTTAACAGCAATGCCATGGAAGTAGCACTGCAGCCCATGCCAGCGCTGACTTGGGTGACCATCGGAGGAATTCTGGACATGTACATCTTCTTAGGCCCTGATCCACAGAGCGTAGTCCGACAGTACCATGAGGTTATTGGTTATCCCATGATGCCACCTTATTGGTCTTTGGGGTTCCACCTCTGCCGATGGGGCTACACCTCCACTAATGTGACCAGAGCTGTGGTGCAGCGGATGCAGCAAGCCCAGTTTCCTCTCGACGTGCAGTGGAATGATCTTGATTATGCTGACAAGAAGCGAGTCTTCACCTTTGACCCACAGAGGTTTGGAGACTTGCCTGAGATGGTGCAAGAGTTCCATGAGCAGGGACTGAAGTATGTGCTCATTTTGGATCCAGGCATCAGTAGTACGAGTCCTCCAGGTTCATACAAACCTTTCGATGATGGAGAGCAGCGGGGTGTTTTCATCAAAAACCTGACAGGACAAACACTCATTGGGAAGgtatGGCCTGGTCCAACAGCATTCCCGGACTTCACTAATCCAGATGCAGTGAGCTGGTGGGAAGAGTGCATCAGAGACTTTCATGCCAATGTGTCACTTGATGGCCTGTGGATAGATATGAATGAACCTGCTAGTTTTGTTCACGGCTCAGTGCATGGATGCCCAGCCACTGAACTAGAGAATCCACCTTATACTccagATGTTATAGGAGGTCAGTTAAACTCAGGCACCCTGTGTATGTCCAGTCAGCAAGCGTTGTCTTCCCATTACAACCTGCACAACCTGTATGGGCTGACTGAAGCTATCGCCACTTACAGCGCGTTGCTGAAAGTGAGAGGCTCTCGGCCGTTCGTGCTGTCCCGCTCCTCTTTCCCAGGACTGGGCCGTTTCTCAGGGCACTGGACAGGAGATGTGCGTAGCGACTGGGAGCAACTGCGATACTCTATCCCCGCTGTGCTGCTGTTTGGGCTGTATGGAGTTCCTCTGGTCGGGGCAGATGTGTGTGGATTTGAAGGCGACACTAATGAGGAGCTGTGTGTGCGCTGGACTCAGCTGGGTGCCTTCTATCCATTCATGAGGAACCATAATGACAGACCTTATGCTCCCCAGGAGCCTTACGTTTTTGGACAGCAGGCCCAGACAGCCATGAGGAATGTGATGATGCTCAGATACTCTCTTCTGCCCTTCCTGTACACACTTTtccaccatgcacacacctcaGCCAGCACTGTAGCAAGACCCCTCTTTATGGAGTTCCCATCTGATCCAAACTGTCCGACGATAGATAGGCAGTTCCTGTGGGGGAGTTCTCTGCTCATTAGTCCAGTCCTAGAACAGGGAGTTGAGGATTTGGCAGCCTATCTCCCCCCTGCGATGTGGTACAGTCTGCACAATGGGCAACTTTACAACAGCAAGGGCCAGTACCTGCTCCTTCCAGCTACACTAGATACCATCAATGTCCATGTGAGAGGGGGCCATATTATTCCACAGCAGGTGCCTGCATTGACGACCTCAGCCTCACGCAGTAACCCCTTCCACCTGACGGTGGCGCTCTGCTCACAGGGCTGGGCCAAAGGAGAGCTGTTCTGGGATGATGGGGACAGCCTAGATACATTTGAGCAAGGAGATTACTCATATATTATCTTCACGGCAGGACAGTCACAGCTGGTGGGTGAGCCATTAAAACTGAATGGAGCTCTGGATGGTTTAGTTGTGGGAGAGGTTCGTGTGTTTGGAGTTCCAACGCCTCCTACAGGAGTGTGGGCTAATGGGAAACGAGTGAGggatttctcttacaccacagacaCCAAGGTTCTTACAGTGTCGAATCTGGCCCTGCTGATCTCAGAGACGTTCACAGTGCAGTGGAGTTTATGAAATTCCTGCTATTCTCTCTTTGCTGGATAATGGAATAACTATCAATGTGTCTTTTTAAATGATGGAAATGCCACATGTCACATGAAAATTGCACTGGGTCTATAGAGATTTTGCAGTCTGAAAAAAGGTTTTTATGTACTCAATAAATTTGACATACATTTTTACGGTGTGTATTCTATTTGACATTTTGAATCTTTCACAAAATACATTACCTTAAACCTGattaaaacagaataaagcTACAGTTCAAATTTG

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K12316 GAA; lysosomal alpha-glucosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248481 lncRNA upstream 12754 12019863 ~ 12021132 (+) True G209775
XR_003402931.2 lncRNA upstream 210976 11808261 ~ 11822910 (+) True LOC113528367
TU248059 lncRNA upstream 324950 11708728 ~ 11708936 (+) True G209410
TU248037 lncRNA upstream 399405 11633912 ~ 11634481 (+) True G209392
TU248035 lncRNA upstream 415652 11618035 ~ 11618234 (+) True G209390
TU248507 lncRNA downstream 16065 12061569 ~ 12061782 (+) True G209798
TU248505 lncRNA downstream 39624 12085128 ~ 12086009 (+) False tbc1d16
TU248585 lncRNA downstream 87756 12133260 ~ 12133471 (+) True G209863
TU248587 lncRNA downstream 91269 12136773 ~ 12139867 (+) False LOC113528416
TU248618 lncRNA downstream 155734 12201238 ~ 12202277 (+) True G209884
XM_026917084.2 mRNA upstream 114223 11861586 ~ 11919663 (+) True grin2ca
XM_034309874.1 mRNA upstream 183550 11830046 ~ 11850336 (+) True rfx1a
XM_026916683.2 mRNA upstream 183550 11830060 ~ 11850336 (+) False rfx1a
XM_026916688.2 mRNA upstream 183550 11830063 ~ 11850336 (+) False rfx1a
XM_034309877.1 mRNA upstream 185265 11830044 ~ 11848621 (+) False rfx1a
XM_026916961.2 mRNA downstream 3903 12049407 ~ 12086058 (+) True tbc1d16
XM_026916598.2 mRNA downstream 70935 12116439 ~ 12122136 (+) True cbx4
XM_026916600.2 mRNA downstream 84087 12129591 ~ 12132297 (+) True cbx8a
XM_026916951.2 mRNA downstream 89765 12135269 ~ 12140371 (+) True LOC113528416
XM_026916816.2 mRNA downstream 113199 12158703 ~ 12190070 (+) False arhgap17b
XR_004579334.1 other upstream 456063 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 496721 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1616005 10349402 ~ 10417881 (+) False G208781
XR_003402925.2 other downstream 113202 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 1430324 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 3767738 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 3872713 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 4094826 16140330 ~ 16145384 (+) False LOC113527983

Expression Profile