RNA id: XM_026917102.2


Basic Information

Item Value
RNA id XM_026917102.2
length 2476
RNA type mRNA
GC content 0.51
exon number 9
gene id zbtb49
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19963720 ~ 19996933 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATACCCATAAAACATTTGCTGTGCTTTCATTAGGTCATAGCGCAGACATGTTTGTTTCTTCTTTAGattaaatttatgattttttttaaaatcttgtgtTTAATACGAAGCTTTGGACGCTGAATTAGCATAAGTTGCTAAATCCGGAAATCCAACTTTGTCTTGGCTGGTCACTGCAAACCTGTTATCCCAAgttgtgtttgtgcatgagtgtgtgagagagtgtgtgcatgatggAAGGGCTGTACACACACAGCGTGTATCTGCTccaggagctgcaggaacagaGGATTCAGGGGCTGCTGTGTGACTGCACACTGGTGGTGAAGGGTGTGTGCTTCAAAGCACACAAGAATGTCCTCGCCGCCTTCAGTCCCtacttcagatctCTGTTCCAGAACTCTTCAGCAGTGAAAAACGATGTGTTTCATCTGTCTATTCAGGACGTAGGGGGCATCGGACAGATTCTGGACTACATGTACACTTCTCACCTGGAGCTTAACCCGGACAACGCGCACACGCTGCTGCACATCGCACAGAGCCTACAGGTGTCTAACATTCTTAACATGTGCACTGCATACTTGAAGCCCGTGACTCCGCCCCTTTCACTGCCCGATTGTGTTCTGGGGAGCCCTTTACCCGCAGAGCCTGACTTccaaagccccgcccccaatGACATCACCAATCCCAATGTTCCATACAGACGACCTCAACAGACAACCGGGATGTCAGTGGCCCCAGCCGCTGGCAACCTGGAAGCAGCCAGTAGTCTTCCAGCTCATGGTTACAAGCTGAGGAACTTTTACAGCAGgcagtattttaaaaaagtcgCAGAGGAGCAGAATAATACCCAGGGTGCCAATCAGAGCCTTCCAAAGCCGCCCACAAATGCAGACAACCAATCACTGCATTCGGCGCCATCTACAACAACCAGTCAGATACCAGCAGACACAGGAAATCCTGTTCTGTCTCAATCCACCGTGCCTGTGATGTCACAGACATTAACATGCTATGCAAATGCTACCGTGCCCCCTACTTCCTTGTCATCATCGACTTCCTGTTCTACTACTCCCGTGCTTCCTGTGAGTGGGGCAAAAAGCACCCCTGCGTCTCGCACCGTGTGCCCTAAAAAGACTGTTTACCTGAAGAAGTTTAATTACCATGTTTTAGATGAGGGGGTGGAGCCTGAgggtttgattgacagctgcagTTCAGAAAGAGACCAGCACGTGGGGACAGAACGCAGGCCAGAACTTGTCAGCATAGACACGCCCACTGAGGAGCCAGCGGAGGAGCCAGAACCCAGGATGCTAACTAACCCCGCCCCACCACAGCAGCCAGAGCAGACATGCCCTCAAAGTCAAAGGTCAGAAGGGCCAAAGGTTGCAGAGAAGAGTAACAAGTGCTGCTGTGAAGTGTGTGGGAAAACATTCAAACACCCCAGTAATCTAGAACTACATAAACGCTCACACACTGgTGAGAAGCCATTccagtgtaatgtgtgtggaAAGAAGTTTTCCCAAGCGGGCAACCTGCAGACTCATCTCCGCCGCCATTCAGGAGAGAAACCCTATATCTGTGAGCTCTGTGGGAaaagTTTTGCTGCTTCAGGTGATGTTCAGCGGCACATCGTCATCCACTCAGGAGCCCGACCTCACCTGTGTGACATCTGTGGACGAGgtTTCGGTAACCTCAGTAATCTGAAGGAGCATAAGAAGACTCACAGTTCAGAAAAAGAGTTTATCTGCGATCAGTGCGGCAAGTCGTTCAACAtgcagagaaaattaatcaaacacaCAATGAGACACACGGGAGAGAAACCGTACTGCTGCCAGACCTGtgGTAAGTGCTTCGCCGGGTCAGGTGACCTCCAGCGGCACGTGCgttcacacacaggtgagcgtCCGTACGTGTGTGAAACCTGCGGGAAAGGTTTCACACGCACTGCAGTGCTACGCCGGCACCGAAACTCTCACTGcaacacgcagacacacactgcGGCCTCCGCGGACACACGTGCTGCGCCCTCTGACACTGAGGCagagcctacacacacacacactcagctgcaCTCTGTAACCGCCACTCAGTCTCCACACTCTCCTCATTCCCACAATCAGAGTGAACTCTGTGCTCTTCCTCATCCCGCCTCTGCCCCGCCTCCTCCGGAAAGTTCCAGACAAGCTCCGCCCTCTCATGACGCTGCCTCCACTACGTTCTTCTCGTcacactcttcttcttcttcttcctctctcccaGATCTGCGCTCTAGTGTTCCGCATCATTTCATATCCAAGCCCCTCCCTTTGAACTCTAAGGCTCCTCCCCATCCTCTAAGGCCCGCCCTCCACTCTGACTCCTCCTTCAGCTGGGACTCGCAatgaaaatgttacagaaaatgagtCTAAAAGTCGCCCACTGACGTCTGTGCTCATTCCACAAGTaattaaagatgaataaaatgttcataaGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253415 lncRNA upstream 13709 19968008 ~ 19970156 (+) True G214012
TU253387 lncRNA upstream 71490 19912139 ~ 19912375 (+) True G213984
TU253382 lncRNA upstream 72133 19873076 ~ 19911732 (+) False LOC113528458
XR_004579341.1 lncRNA upstream 191206 19784413 ~ 19792659 (+) True LOC117598770
TU253255 lncRNA upstream 268306 19698004 ~ 19715559 (+) True G213864
TU253526 lncRNA downstream 74762 20071695 ~ 20181878 (+) False G214098
TU253520 lncRNA downstream 144482 20141415 ~ 20144597 (+) True G214098
TU253523 lncRNA downstream 144482 20141415 ~ 20152693 (+) False G214098
TU253575 lncRNA downstream 216473 20213406 ~ 20214427 (+) True G214144
XR_004579413.1 lncRNA downstream 267265 20264198 ~ 20393220 (+) True LOC113528473
XM_026916788.2 mRNA upstream 34851 19933824 ~ 19949014 (+) True LOC113528304
XM_026917018.2 mRNA upstream 72990 19908167 ~ 19910875 (+) True LOC113528458
XM_026916954.2 mRNA upstream 82881 19888315 ~ 19900984 (+) True mcm7
XM_026915987.2 mRNA upstream 98310 19860406 ~ 19885555 (+) False LOC113527852
XM_026917105.2 mRNA downstream 4025 20000958 ~ 20002680 (+) True drd5a
XM_034310264.1 mRNA downstream 25580 20022513 ~ 20173352 (+) False LOC113528520
XM_026917114.2 mRNA downstream 164025 20160958 ~ 20173352 (+) True LOC113528520
XM_026917116.2 mRNA downstream 164678 20161611 ~ 20173352 (+) False LOC113528520
XM_026917157.2 mRNA downstream 433708 20430641 ~ 20438868 (+) True leprotl1
TU253418 other upstream 2485 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 30579 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 73700 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 670647 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 838625 19144074 ~ 19145240 (+) True G213491
XR_004579430.1 other downstream 25576 20022509 ~ 20076408 (+) False LOC113528520
TU254301 other downstream 1343483 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 1344314 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 1344314 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 1344314 21341247 ~ 21348829 (+) False hopx

Expression Profile