RNA id: XM_026917105.2


Basic Information

Item Value
RNA id XM_026917105.2
length 1723
RNA type mRNA
GC content 0.60
exon number 1
gene id drd5a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20000958 ~ 20002680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cACAATGGCACGTTCATCCGCCGTGCTGCCCGCGCGCGCGCTCCTCTCCTGTAGCGGAACGGATGGCGCACCGTCACTGCGCCCGCTGCACGCGCTCACCTGACACCGTCCGCCGAGACCATGCGGAACCGGAGCGAGCCGGAAGAGGAGGACGGCGACGACGGCCGCCGCGATCTGGCGCTGCGCGTGCTGACCGGATGCGCCCTCTCGGCGCTCGTGCTGTGCACGCTCTTCGGCAACGTGCTGGTGTGCGCGGCCGTGCTGCGCTTCCGCCACCTGCGCTCCAAGGTCACCAACACGTTCATCGTGTCCCTCGCGGTGTCTGACCTTCTCGTGGCAGTGCTCGTGATGCCATGGAAAGCCGTGGCGGAAGTCGCAGGGTTTTGGCCGTTTGGCGCATTCTGTGACATCTGGGTCACGTTTGACATCATGTGCTCCACGGCGTCCATCCTCAACCTGTGCGTGATCAGCGTGGACAGGTACTGGGCCATCTCGAGCCCCTTCCGATACGAGCGCAAGATGACCCAGCGCGCCGCATTTGTCATGATCGGCGTCACGTGGACTCTCTCCGTGCTCATCTCGTTCATACCGATACAGCTGAACTGGCACAAGGCCAGCGGCGGGGCAGAGATCGTGCGAGGCTTTAACGGCACCGGCACCACAGCTCGCGCGCTCACGGACGCGGAACAGAACAACTGCGACTCGAGCTTAAACCGGGAGTACGCCATCTCCTCGTCGCTCGTGAGCTTCTACATCCCCGTGGCAATCATGATCGTGACCTACACTCGCATCTACCGCATCGCGCAGATGCAGATAGGCCGAATCGCGTCGCTGGAGCGCGCGGCGGAACACGCGCAGAGCTGCAGGACCGGCAGCCGCGCGCTCGAGTGCCAGCACCAGCAACAGCAGCACAGCTCTCTCAAAACGTCCATCAACCGCGAGACCAAAGTGCTCAAGACCCTGTCCGTGATCATGGGCGTGTTCGTGTGCTGCTGGCTTCCGTTCTTCATCCTCAACTGCATGGTGCCGTTCTGCGCGAGACGCAGAGAGAACAGCGGTGACAGGCGCGCGGGCCTGCCGTGCGTCAGCGAGACGACCTTCGACGTGTTCGTGTGGTTCGGCTGGACGAACTCTTCGCTCAACCCGGTGATCTACGCGTTCAACGCCGAGTTCCGGAGAGCCTTCGCGAGCCTGCTGGGCTGCCGGCGCCTGTGCGCGAACACGCCGGTGGAGACCGTGAACATCAGCAACGAGTTCGTGTCCTACAACCACGACACGCTGGTGCACAAAGAGATCGCCGACGCCTACGTGAACATCATCCCCAACGTGGTGGAGTGCACGGACCACGAGGACACGTTCGACCGAATATCGCAGCTCTCGCgccaggaggaggaggaggaagaggaagaggaggatgaggaagatgTCGTGGTCACGGACTCGGCGGAAATCAGCCTGGGCAGACTCACGCCTTTCAGCAGGAACGGAATCCGCTGAAGTCGCGCGCAACAAGTAGGAGCGAGTTCAATACACAGCAAAATCCGCTACAGCGCAGAATTCCCACCTTTAATAacgttaacacacacacacacacacacacacactcttctctcttTACTTCTACAGTGATGCATTTTAAAGCATTCTCAGCTTTCTGTACtccagaggaaaaaaagtgattcatacatacccttattattattattattattattattattat

Function

GO:

id name namespace
GO:0007212 dopamine receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004952 dopamine neurotransmitter receptor activity molecular_function

KEGG:

id description
K05840 DRD5; dopamine receptor D5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253415 lncRNA upstream 30802 19968008 ~ 19970156 (+) True G214012
TU253387 lncRNA upstream 88583 19912139 ~ 19912375 (+) True G213984
TU253382 lncRNA upstream 89226 19873076 ~ 19911732 (+) False LOC113528458
XR_004579341.1 lncRNA upstream 208299 19784413 ~ 19792659 (+) True LOC117598770
TU253255 lncRNA upstream 285399 19698004 ~ 19715559 (+) True G213864
TU253526 lncRNA downstream 69015 20071695 ~ 20181878 (+) False G214098
TU253520 lncRNA downstream 138735 20141415 ~ 20144597 (+) True G214098
TU253523 lncRNA downstream 138735 20141415 ~ 20152693 (+) False G214098
TU253575 lncRNA downstream 210726 20213406 ~ 20214427 (+) True G214144
XR_004579413.1 lncRNA downstream 261518 20264198 ~ 20393220 (+) True LOC113528473
XM_034310034.1 mRNA upstream 4025 19963720 ~ 19996933 (+) False zbtb49
XM_034310033.1 mRNA upstream 4025 19983623 ~ 19996933 (+) True zbtb49
XM_026917103.2 mRNA upstream 4025 19983623 ~ 19996933 (+) False zbtb49
XM_026917102.2 mRNA upstream 4025 19983865 ~ 19996933 (+) False zbtb49
XM_026916788.2 mRNA upstream 51944 19933824 ~ 19949014 (+) True LOC113528304
XM_034310264.1 mRNA downstream 19833 20022513 ~ 20173352 (+) False LOC113528520
XM_026917114.2 mRNA downstream 158278 20160958 ~ 20173352 (+) True LOC113528520
XM_026917116.2 mRNA downstream 158931 20161611 ~ 20173352 (+) False LOC113528520
XM_026917157.2 mRNA downstream 427961 20430641 ~ 20438868 (+) True leprotl1
XM_026917123.1 mRNA downstream 436761 20439441 ~ 20444946 (+) False LOC113528524
TU253418 other upstream 19578 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 47672 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 90793 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 687740 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 855718 19144074 ~ 19145240 (+) True G213491
XR_004579430.1 other downstream 19829 20022509 ~ 20076408 (+) False LOC113528520
TU254301 other downstream 1337736 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 1338567 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 1338567 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 1338567 21341247 ~ 21348829 (+) False hopx

Expression Profile