RNA id: XM_034310264.1


Basic Information

Item Value
RNA id XM_034310264.1
length 4999
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC113528520
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20022509 ~ 20173352 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGACAGGGGAGAGTCTGGCAAACAAAGGTGCTGGGAAATGCCTTGCTCTATCTAGCCCATTGACTTGAGGAATACCTGATTGGGGTTGAGGCCTATTTTTCAGTGAACAAGGACGTTTTCTCTGTTGGGGATCATTTGTGGATtacttttccctttttcctGTGGCATTGGACGTGGGATCCAGAAATCCAGAAATCCAGAAATCCCTGGGAAGATAACATGGGTCCATTACAGCTCTCTACTCACACAAATGGATCATTCATCTACCTTAAGAGTACCGATTATAAGTGTACTTTGGTTTTTACTGAATAACTTATGGTCTCAACCATGAATTCAAACAGCTTGCAACAAAATTTCATCTTATTTCTCGAAAAGACAAGAGAGACTAAAGAGGCACCCAAAACCCTCAATGGGCGTCTCAATTGCGAAAAATGCCGCTTTTCAACCAAAGACACTGCGCTATTTGAAAGGCACGTGGCTCAACATGAGGAAGTGACCTTCTCCTGTACTATCTGCAACCACATCTCTTACTCAAGAGTCGAATCTCAACGACACCTTGTTAAACACAAAGGCTCGTTTCCCTACAAGTGTAATTGGTGCACTTACGGAGCAGTCAGGAGGGACTACATGGTAAAACACATTCAGAGGATACATGGGAAGTCTGCAGATGGAATCTTCACAACtgattgtactaaaaaaattgAAGGGACTAAAGGTCTGTGCCTGCCCACTCCAAGAACTTTGGGTGGACCTTCATGTGATGTAAAGGTTGTGAGCCATTCAGCAGGAAATGTGTCCAGTCTACTTTCTAGTGCTAGTCAGACAAGACCTAGTGCACCATATCATGTTACAAGTACAACTTGCAGTCTACCCATTATTAAGTCTCAACCCTACATTGTGCCCAGTACTACTCACACAGTATGTAAAGTTACACAAGGAATTATTAATCCACCAAATATCACTGTTAAAGAAGTAGGTCCAACTGTAGGTAAAGCAATagagtatattaaaaaaatgactgaaaaaacaTCCTTGGAAAAGACTGCTGTAACAAGTGCACTTCCCAGAGTTCATGTTGGCATATCTGCAGATCGTGCAGTTCAGCAAAAGCCACCGCTTCAGAGCCACGTGGTAGGTACCACAGAGAAGACAGCAGTTCAGTCCAAAATAATTCCGAAAATTCAAGTTGGACTTCCAGTCACTACTAATAACCATCTGAAGACACTTCTCAGCAACCAGCGTGAAGCTCCAGTAGAACAAAAGTCAGTCATTTCTGGAGCTGTACAAAATATTCCAGTGGCACATGTAGTACAAAGGTCTGTTCCATCTTCAGCAAATACCACTATCCCTGTTGAGCGATTCAGACAGGGAGTACCATCCATAAAACGTGGGGCTCAGacatcagttaaaaacagtCAACACAAGGCAAGACCCaatatccttgtgaggacaCCAACTATGACTCTTGAGTCAAGTACAAAGACAGATGTACAAATGGGATTATTAGCACCCTTAAACCAGCCCATCCAACACAACAGACCCTTGATGATACCAAGTCCTGAGGAGAGAAACCCTCCCCGGTCCAGTGTTCAAGTGGAACTGCTAGCACCTTTAAATCAGCCCATACAACACAACAAACCCTTAACGGTATCCTGTCCTGAAGAGATTACCATCCCGGCTGGATGCCTCGTTGAATTGGTGGAGGTGAAAAATGTCAACGGTACACGCGAATTGGAGCTTCGGCTAGTACCACAGCAGCTTACTGGACCTCAGCAGGGGGACTTGAAAAGTactactgaatctgctacaacAAGCAGATTGTCATTTAAATGTAGGGTTGCTACAGGTGATAATCAACCAATAAATATGAACCACGAAATCAAAACCCCAAGGGCAAATGCCATTCCTGAGCACCTGGTCCAGCGCTCATATCTGAAGAAACCTTCAGCAGATGACAaggtaaatgtgaaaaatgaaaccgAGGTGAATGAGAGAGTGCTTTGTTCCAGGAAGATTGGAACTCAGGCACCAGGATCTTCAAGTAAATGGTTCCACACTGTCTCAAGGTCAGTAGTGTCTAACCCTTCAGAATCACCCAAGTTTATGCAACAACtatgtgctggacaaaaaaaTGTTGCAACAGAACCGGTTAAGCCACTGTCTCATGTGCACTGCACAGTAAAAAACATTTCTCCACATGCAAGTAACAAGAATATTACAGCTGAAGGTCTTAAATATGAGCTCAGAGCTGGTCAACTAACACCAAACAAACAGGAAGATGCAGAATTGAGTTGTCAAGGACTCCCTGtcatttcatctgttttttcaCTGTGCCCTATTCCTCAAGATACTCTGAGCCATATTCACACCAGAGAAGGAGAGGCCCAGATATCTGTAGATTCAAGATCAAAAGAAAGCATAAAAAACACGGACAACCCAAGAGTCTGTAGACCTACCCTGAAAACAGAGGATGAAACAAGATCGTTGACTGACAGCATTCGTAAATCTGGTCAACTTACTGAGAAGAAGGATGAGATTTTAGAAGAACCCAAGACACCTGAAGATATAGTGAAAGAAAAGCTAGATGCTATGGGGGAGAAGACATTTCCAAATGATGAGGAGGACAAGATTATACCAGAACTCTCTAGATCTTCAACTGATGCTCTACAGACAGATCGGTCATCCAGTATGAACAGTTCATCAGTGAGCAAGTCTGACCATTCCACACAACCtgaaaaaatggagaaaacaaaGTTGGAATCAGAGAAGAGCTTGCTTGCAAAGAATGACAGTCCTCTCGCTTCGTCCATGAATCCTATAGTAGCTTTGATCAGAATGCCAAGCTtggaatttttttccctttcagaaacTGCAAATAAAGATCAAGAGAAACAAAATAATGAGGAAAGCATAACTGCTCGTCCTGTTGTCTGCTGCACGTCAAATCAGCAAAACCTACAAGAAAGAACAATTAAGCTGGTTTTAAAGAGAAAACGGTCTGATACTAACACTGATCAAGACAAAAGGATAGGCCTAGTATGCATTGATGTACCACCCACAAACAAGAaagctaaaaaagaaaagaagagggcTAAGAAACACAAGTCTTCTAAAGACCAGCAGTTGTTGGGGAAAAGTACAAtgggaaaaatgtgtttaacgCCGCTAAAAGATGATCAACTAGTCAAACTTCCAGGACCAAATCAACCTGTGGTGGTTCTAAACCATCCAAATCCACTAGTCCATATGGTCAGTGCAGAAGGTCAGCACTGTAGAAACTCAGCTCCTGACCTCTGTAATCAGGATGGAACCACTCTGCCCAAACCTGTGAGAACATGTCCTGCATTTAAAATGACACTGAAAAAAGTCCAGGGACAGAATTATCAGGTCACGGAGCTTCTTCTAAAAGGTGTCTCTGAAAAAACAGTGCTCTGacagcatttgtttttaatgagcACTGTTTTTAACAAACCCTGGTTAACTATGTTCATCGTAGGTTTCTCCTCCATCTGTACACCTTTGCTAGTGTTTTACCTAGCTACTTTGCAAGCTAGATAGATGCTGCATTTGGAACAGTAGGATGTAGCTGCTAGGAACACCAGGCTTTAAGGGGGTTTGCTAAAAACAGTATTGgaatacaaataattttttacagtatttttacaGTGTTTCCTGGAATGTCGTTTGGGACCCTTCATGACATTTTAgttgttatttaatgttattcagTGTACTTCAAAATCTACTGAAGGGATCCAAAATCGTAATCTGGATCTAGAGCAACTTGTTACATGTACAGGAAAGCTTTTATGTTTGTATATAAAGAAATTTggtttaaagaaatgtttttgtacttttgACACAAGAACTTGACATTTCCAATATATCACAGTGTTCAGCGTCAGTTATTCCACTATAGAATTTTAACATAACCACacaaacaatatttaattattattattattatttttttttttaaaaaaacctggAGACTTGCCTCTTCTTAGATTTTAGAGCACTCCCTAAATGTATGAGATATCCTTTATATGTATGAGAGAAGTATGAACACTATTTTATGTAATGTGCCAACATCAGTAATGAAGTGTTATGAGGCAAATTGGTTGAATGTAACAAATTGATAAATTTATAGCCAACATGATGTCACCGTTTTTAGGAACTTCTGTACAAGTTTGGATGGTATTAAATACAAGATAAAACTGCCATATAACAATGTAactatttcatatttaattgtCACTGTATACTGTCATATGAATCTATTGCCACACCATTAGATATATGTTTTTTGATTGTTAAACCTGGCTGACAAATGTCCTGCCCTTTCTTAAGTTTTATATTAGAGATGCACTGAAATTTCAGCCACTGAAATTTATTAGCCAAAACTACACTTTCAGTTTAAATGCCAGAAATTTCACCCAAGAACTTTTCCATTAAGGTTTCAATAATCACTTCTAAACACAACATTCTGGGCAATATGCAGACCAcatacagttcttttttttttaaattttatgttgtttttgaCTGCTCAGTTGTTTGGTGTATTTCAAGGACGGACCTGTCAATACTGGTGTTCTTTCATTAccttggatttttttaaataaatgctattaattatttatttgaattttcagAAGCATTTGAAAAACAGTGCCACtccgaagctgattattttcctataacagcatatctcaaaatgttttattcctcttactacagcaatttgccagtgctaacgaattttaatgtgttatgttaaataatgatattataCTTTTTAGCAGTTTACAGTCACATTTAGTGTTGcagaatgtccacaaaacagtTAGATCCTGTTAGTGCTTCCATTGTAGCAGCTATTcactagccttttttttttctcttgaactGATTTGCCTTGaaaactttctgaccaatcagatttgagaattcatccatgctgtggtatacatTGTATTAAATTACAGTTTAAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253415 lncRNA upstream 52357 19968008 ~ 19970156 (+) True G214012
TU253387 lncRNA upstream 110138 19912139 ~ 19912375 (+) True G213984
TU253382 lncRNA upstream 110781 19873076 ~ 19911732 (+) False LOC113528458
XR_004579341.1 lncRNA upstream 229854 19784413 ~ 19792659 (+) True LOC117598770
TU253255 lncRNA upstream 306954 19698004 ~ 19715559 (+) True G213864
TU253575 lncRNA downstream 40054 20213406 ~ 20214427 (+) True G214144
XR_004579413.1 lncRNA downstream 90846 20264198 ~ 20393220 (+) True LOC113528473
XR_004579414.1 lncRNA downstream 90846 20264198 ~ 20374853 (+) False LOC113528473
XR_004579412.1 lncRNA downstream 90846 20264198 ~ 20327353 (+) False LOC113528473
TU253833 lncRNA downstream 298177 20471529 ~ 20471764 (+) True G214369
XM_026917105.2 mRNA upstream 19833 20000958 ~ 20002680 (+) True drd5a
XM_034310034.1 mRNA upstream 25580 19963720 ~ 19996933 (+) False zbtb49
XM_034310033.1 mRNA upstream 25580 19983623 ~ 19996933 (+) True zbtb49
XM_026917103.2 mRNA upstream 25580 19983623 ~ 19996933 (+) False zbtb49
XM_026917102.2 mRNA upstream 25580 19983865 ~ 19996933 (+) False zbtb49
XM_026917157.2 mRNA downstream 257289 20430641 ~ 20438868 (+) True leprotl1
XM_026917123.1 mRNA downstream 266089 20439441 ~ 20444946 (+) False LOC113528524
XM_026917122.1 mRNA downstream 266091 20439443 ~ 20444946 (+) True LOC113528524
XM_026916633.2 mRNA downstream 573356 20746708 ~ 20779232 (+) True ankrd50
XM_034310040.1 mRNA downstream 838858 21012210 ~ 21013848 (+) False nudt6
TU253418 other upstream 41133 19978314 ~ 19981380 (+) True G214015
XR_004579366.1 other upstream 69227 19933824 ~ 19953286 (+) False LOC113528304
TU253379 other upstream 112348 19906202 ~ 19910165 (+) False LOC113528458
XR_004579333.1 other upstream 709295 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 877273 19144074 ~ 19145240 (+) True G213491
TU254301 other downstream 1167064 21340416 ~ 21349086 (+) True hopx
TU254300 other downstream 1167895 21341247 ~ 21348829 (+) False hopx
TU254302 other downstream 1167895 21341247 ~ 21348829 (+) False hopx
TU254303 other downstream 1167895 21341247 ~ 21348829 (+) False hopx
TU254299 other downstream 1168214 21341566 ~ 21348829 (+) False hopx

Expression Profile