RNA id: XM_026917121.2


Basic Information

Item Value
RNA id XM_026917121.2
length 4622
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC113528522
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8454003 ~ 8484944 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCGTGCGCTCCGGTCCGTCTCGCTCCCGTCTGGATCCCTACCGTGATGCTGACAGCGAGGATGAGGAAGACGCCCTCAACTCCCTTAATTCGTCACCTCTGAGCGGAGTAAAACTGTAGGCTCCTGATCCTGTCCGCGTTTCACGGAGATGATGATAAGGTGTCACACTCGCAGCTCTCGGCCACGCTACGGATGTCGTCTTGCGCCCCGGTGGCGTCGCTGAGTAGCGGGGAGTCACTGTGCCAGATCCGGTCACACCGGGAAAGTTGCGCTTGAGAGTGCTGTGTGGGACATGGGAGCACGCCTGGGCCGTGTGGGATACGCTGGTGAAGGATCGGCGTCCTGAGTGGCGAGCTGTTTGTTGGTGTCGGGAGAACCAGGGTGCGTCGCACCGGCGCCATGCGCACCGAGCACAGCTTCGTTTTGCTGCTCCTCAACGGGACGGCGTGCCTGTTGGTTTTGGCACAGGAAGATCGCCACCCCTACTCTTCGCTGAGTCCTAAGTCGTCCTCTCTTGCAGAACCCTCTAAGACTCTGAGTGTTCTGGGCGGTCAGGGCTCTGTCTCCCCCCTTAGCCGCTGGGTGCTGCACAGCCGCAGTCGAGCAGCCAATGCTTCAGCGCTAGAGCTACCCTACCGCTCACCTGTGCCCTTCTCCAAGCAAGAATTTTGGGAGATGCTGGGTAGTGACCTCCTCAAGCCTGACACCAGCTCTGATGACGATGCCTCAGCAAGCTCTCGTGTCAAGCGCCGTCCCATCGTCAAGACAGGCAAGTTTAAGAAGATGTTTGGCTGGGGCGACTTCTACTCAAACATCAAGACAGTGCGTCTCAACCTGCTCATCACTGGCAAGATTGTGGACCATGGTAATGGGACATTCAGCGTCTACTTCCGGCACAATTCCACAGGCCAGGGCAACATCTCTGTCAGCCTGGTACCACCTGTAAAGGCAGTGGAATTCGACTTGGAGCGCCAGAGCGTGGTGTACCCTAAGGACTCCAAGATCTTTAACTGCCGTGTGGACTACGAGAAGGTGGACCGCAGCAAGCGCACCTCACTGTGCAACTATGACCCATCCAAGACCTGTTTCCAGGAACAGACCCAGAGCCACGTCTCCTGGATCTGCTCCAAGCCCTTCAAGGTCATCTGCATCTACATCTCCTTCTACAGCACAGACTACCGGCTAGTGCAGAAGGTCTGTCCAGACTACAACTACCACAACGAGATGCCCTACCTTCCCTCTGGATAGAAGGAAATGGGCAAAGGGGCAGAAAGACAGGGATGGGATTTGAGAAGAAGTACAACCAAGGAGGGAGGGATGAGGAGAAAAgagcatgaatgaatgataagGTTGGAAGTATTGATGTGGGAGATGTGGGTATATTTTAAATTGTAGAAAAGCTCTCTTCAGGGTGTATGTGGGACCTTTTAGGGAATTGTACCTGTTTGGAAAAGACCCCTTTGCAAACAGAGCATTTTTCCATGGATTGTGTTTGATCATCTGTAATATTTCTAAGGTGAATGTAAGGCATTTTGCTCCTGTGATAAATGTCTTTAAAGAaactctctaaaaaaaaaaacctgacaaatGTGACTGCAAAGCTCAACATATGCAAATCAAGCTCTCTAGTGCAGTTATGCGGGTGAGAGAGCACACTAACATGAGGCTTTGGTGACAGGCAACCCCCACCGGTGTGCTTTTTACGTATCATCGGGCCTACATCAGGGCAAGGTGACATACATATCCAAGAAAtcataaaacaaagaaacaattaCTATGTTGATTTCAATACGCCTACTATGCAGATGCTAGGGGTGGTGTTCAGGTTCCTGAGGACAAAAGAAGTCTATACTTTCAGTGTATAATTCAGGTTGAACTCTCCAGAACAGCCAACAGCAACTTAGACACACATGACCTCTGGGTATCCTCAACTGCAAATGTTCTCAAAAtaaaagaggaaagagaaagaaagaaatgattaaGACAGTGGAGCATGCAAAAGCATGGCAAAGataagtgaaagagagaaaatgcaaaagtgAGAGAGGGTTTAGGAcgctttttaattaaaagtgaagCAGAGAGAGATGTTGAGTATGAATTGCAGCATCCGCTCTATTGTTCTAGCCATATGAGACGGGgaaaaaagattacattttgTTGCTGACAGGACTCCTGATTTCTCAGCATGATAAGTTACCCACTGAATGCAAGATTGCTCCATCCTTTTCTGCTAGAGTCAGCCTGTAATCTGTGATTAAAAAGCAGAATATTATGGTGATAATTATGCataatttaagaatatttaaagaCATTGTTAAATGGATTGGATACATTCAGATATTCATTTGGCCTGGGAAATCTTTTGACAGGCGAAATTACTGTATTAGACAAATCAGCAGTCAACTTGACCTTCAATAGCTTTGTGATTTAATGACCATTTCTGTTAAGGTCATGttgtaataaacagattaactTTGATAGTGGGTGAGGAGGTCAGAAAGCGAAAGagtataaaaattaagaaagGAGGTGAGAAAGAAGAATGGAAGACAGTAAAAGAACAGTGACATGAAATGCATCTGTGAAGGTCAGGGAGTTGACAAACAGAGAAGAAAGTGGTCAGGGGGTTGTTAGAACACTAAGTAAATAGGACAGATgtagaaaagcaaaaaagaatataataagCATGACTTGAATGATGATGCTAAATGCAGTAACAATAGCACAATGTGGGACATCAAAGCATCGTGCTGTTCAGTtcaatggaagaaaaaaatgaagagaaagagagaaggagaaggtaAATGGCAGACTTTTTATGAGTTTATAACTAAAAGCATGTCTTGCCTGAAGAGAAAGCCAGCGTAGTGTATCCCCCTCAGGCCTGCACATTAGTACTGATATAAAGGCAGGAGAATCCTGAACGCTAGGACTATTTATGCTCTGTTATGAAGCCCTGTGCCCATTCCATTTATCTCAGTCTACTCCCTTTCCATCCTACATAGGCTCATTAGGAACTGCTCATGGagccatttttcaaatgttctaTATGAgtgcttaaaaaaaactaactcAATCAAATATAATACCAGTCCTACTACACTGTTCAGATGCAAATGATCAATAACTTTAATggtctttcactgtttatactCAAATAGTGGCTATTTCCTCATCCAGTTAGCTCCATTATATCCCTCGTCAGGTAATTCCTATATCAGAAGCACAGATACATGTGCAGAGATATACACACTAGGCCTGGTGTGGTGGTTCTGTCGACTCTGGAGCCTGCATCTTAACTACACGCTAAACCCTTCCAGTTTAACTACCTGCTAGTGTCCTCCAGTTTAAATAGACTCTAATCTCCTCCAGTTTAACTACACTCTAATCTCCTCCAGTTTACGTACACGCTAATCTCCTCCAGTTTAATTACACTCCAATCTCCTCCAATTTAACTACATTCTAATCTCCTCCAATTTAATTACACTCTGATCTCCTTTAGTGTAACTACACAATCTGAGTAACTACACAAAGTGGGACATGCTCATTCACTCTTTCTTACTCTTACaccccacacacattcacacagccTTTCACACAGACATTCTTATtgttttacatatacatatacatttggAAAACAAAAGCATACTCTTGGCAAAATAATcttcaggatttgaactctctctctctatatatatatatatcttaccATCAAATACTGCTTCTTCACCTTTCCTCCCTAGCAGCTGGACCCACATCTGTTACATGGTACACACATCTGGATTACAATTCACCCCAAATGCCAAACTTTACATTATTGCTTTGTTAAACATCACTGTCATACAAGCTTCTCATCGTCCTGCTGAAGGATCCTGTTAAGTGTTGCTAAGACACTCATTgcctaaatataaaaaaaaaaaacacttcatggTTTAGGAAATTATTCAGATGCAGATGCAAAAGAAAGGGATTTTTAATGGTCAGAGAGATCTTTGTGGGACTTTATCTTCAGCAAGTAAGCTAAACCAGCTTAATTATTTTACCTAATGTAGCATCTGTTCTTTACTCAGTCTGTTCTCTGAAAAACAGATTCTGTCATCGAGCGAGCTGTCATTCGTGGACAGCAATTCAGCAATAGGCCTCAACCGGAGAGTGAAAGGAAAGGATGAACTTGTGCTGTCACGCACTGGTGGGTGTTGCCAACAAAAGGAGAAAAGTTCAAGTGGTGGAATGTGCCAGTTGTCATAGCAACCGGCCCCTGTAAATTGCGGACGGAGCCTCGGACACTTGGCTCTGAACTGAGTTAGTGCTCAATACAAACTGAAACTGAGCTCACATATGGCAGATGGTACTGTCGGTActatataaaatacatcattatataaatatataaatatatatcctCACAAACCCAGCAGTGGGACTGGATCTATTGTATGGGACACTCAAGTAGACTCTCTAGCTCATTTaaggtttgtttatttctctattttttacattgtttcTTTTCCATGTGCATCATGTTGATGTAGTGTATGGATGATAATGGTGGCATTTATTGTGGTTTTCTgacctctggaaaaaaaaaatcaataaactaGACAGGTGTGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245973 lncRNA upstream 164098 8287457 ~ 8289905 (+) True G207717
TU245854 lncRNA upstream 203022 8236733 ~ 8250981 (+) True G207612
XR_003402951.2 lncRNA upstream 244136 8209298 ~ 8209867 (+) True LOC113528504
TU245858 lncRNA upstream 252411 8201292 ~ 8201592 (+) True G207616
TU245851 lncRNA upstream 295822 8157944 ~ 8158181 (+) True G207610
TU246111 lncRNA downstream 692 8485636 ~ 8485935 (+) True G207845
XR_004579432.1 lncRNA downstream 14810 8499754 ~ 8534003 (+) True LOC113528543
XR_004579433.1 lncRNA downstream 14810 8499754 ~ 8534003 (+) False LOC113528543
TU246201 lncRNA downstream 207777 8692721 ~ 8717277 (+) True G207927
TU246197 lncRNA downstream 267771 8752715 ~ 8759793 (+) False LOC113528294
XM_026917167.2 mRNA upstream 95852 8311016 ~ 8358151 (+) True ngfra
XM_026916463.2 mRNA upstream 227998 8219525 ~ 8226005 (+) True tmub2
XM_026916464.2 mRNA upstream 227998 8219527 ~ 8226005 (+) False tmub2
XM_026916181.2 mRNA upstream 235652 8212034 ~ 8218351 (+) True asb16
XM_026916182.2 mRNA upstream 236647 8212029 ~ 8217356 (+) False asb16
XM_034310186.1 mRNA downstream 358253 8843197 ~ 8873465 (+) True LOC113528198
XM_034310049.1 mRNA downstream 391288 8876232 ~ 8882985 (+) True LOC113528197
XM_026916345.2 mRNA downstream 402461 8887405 ~ 8893797 (+) True LOC113528067
XM_034310187.1 mRNA downstream 417784 8902728 ~ 8904664 (+) True LOC113528196
XM_034310050.1 mRNA downstream 424726 8909670 ~ 8915323 (+) True LOC113528195
trnas-cga_1 other upstream 445736 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 600494 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 1154319 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 1181472 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 1338068 7108178 ~ 7115935 (+) False LOC113528597
XR_003402909.1 other downstream 411674 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 576621 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 1459362 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 1864458 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 1887471 10372415 ~ 10417881 (+) False G208781

Expression Profile