RNA id: XM_026917127.2


Basic Information

Item Value
RNA id XM_026917127.2
length 1589
RNA type mRNA
GC content 0.40
exon number 1
gene id si:busm1-163l24.4
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8201765 ~ 8203353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCCAATCACACAAAATATAACCAGGAGGCTTCCTTTTGTTGCTCTTTGACACAGACTGGTACTAACGTAAACAGCACATTATGAGCACATTGAATGATGATAAATGTGAAATGGCAGAGGTAGCTCGCAAGAACCAGGACCCTTTCAGCTGTCCTATCTGTTTGGACCCACTTGACAATCCGGTAACAATTCCATGTGGACATAACTACTGCATGGCTTGCATTGAGGATTACTGGAATGAGGACAAGCAATTGGAGTCCTACAGCTGTCCTGAGTGCAGGGAAACCTTCACACCGAGGCCTGCTCTTAACAAGAACACCATGTTTGCTGAGGTGGTAGAGCAATTTAAAAAGGTAAGACTACAGGATGCTTCACCCTGCAACCGTGGACCTGCAAACGTGGAATGTAGCATCTGCACTGAAAGAAAAAGGCAAGCTGTCAAATTCTGCCCAGACTGTGTCGAGTCATACTGCGAGGCTCATACAGTTAGGCATGAGAAAGCAAACTGTGGAGAGAAACACATTGTAGTAGTCATTAGCAGAGAGCCTCGAATGGATATCTGCCTCCGTCATAACGTCCCACTGGAGATATACTGTCGAACCGACCGGCAGTTAATCTGTTCTCTTTGCTTCGCTGAAAGCCATAGAGATCATGATGCGGTTTCAGTCGCGCCAATAAGCGCAGAAAGACGGGACCATAAAAGTTCCCGCATGGATACACAGCATGGGAACAGGCACACATCCCACAAGCATGGAAGGAGGAAACACAAAAGAAACAGGCATGGTAATGGACATGGGAGTAGACACAGAAGCAGCTCCAGAAAGACCTTGCATTTGAAAAACAGTCATGAAGTGAGTCATGAATGTCATGGGAGTAATATGATCAGGCATGGGCATGTTGTAGGAGATGGGCATATGAAGAGCAAACATAGGAGTAGACATGGAAGCTGGCACATGAGCAGCAGGCATGAGAGAAATCAACACTAATGTTAAAAAGCATTAAGATGTGGAGAATGGTGTGGAATATGGCATGATTATAGAAGGCCGTAAGGTCAGATATGAGGAATGGAGGAAGCACTCAATACTGCGATTCTTTATTTGAACCTGAGATACTTAAAACTTTCTTGCAAgtgaaaatgttaaattatttttgaattaatgcatttaaatgttacaagtattatttattaacaagtATTGAGGATTTCAAAATGTGCATCATGGCGAGTATTTCTCAACAAAAAGTTTATATTTCCATCTGATTTTGCATGAATTTGATCTTTTATATAATctacaatttttttatgtttctgtatctttatatttttgtaacattatGGATGCTGGCATCTTCAAATGACTTTCAAATCCTAATGAGTGCTCAATTTCATACTTACAATTATTAAGAAATCTTTCAGACTCTATCCACTCACTAAATCTGTTTAAGCAGTTAATTCTGATTACCTAAAAGTTAATAGTGCTTTGTACATAATTTATATGAAACTATTAGTTATGAAcatagagggaaaaaataatGGTTCCAGACAATGTAGAAtacagtgtgtaaatatataactGAGTGAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245903 lncRNA downstream 987 8176358 ~ 8200778 (-) False G207650
TU245901 lncRNA downstream 987 8195899 ~ 8200778 (-) True G207650
TU245906 lncRNA downstream 87191 8110658 ~ 8114574 (-) True G207653
TU245805 lncRNA downstream 164917 8033282 ~ 8036848 (-) True G207571
TU245797 lncRNA downstream 172316 8029206 ~ 8029449 (-) True G207565
TU245977 lncRNA upstream 76612 8279965 ~ 8282317 (-) False selenow2a
TU245974 lncRNA upstream 81796 8285149 ~ 8289767 (-) False selenow2a
TU245988 lncRNA upstream 150357 8353710 ~ 8358074 (-) True G207732
TU246052 lncRNA upstream 228645 8431998 ~ 8432261 (-) True G207793
TU246126 lncRNA upstream 289462 8492815 ~ 8493041 (-) True G207860
XM_026916053.2 mRNA downstream 46491 8130367 ~ 8155274 (-) True rnd2
XM_026917046.2 mRNA downstream 215943 7984469 ~ 7985822 (-) True rprml
XM_026917089.2 mRNA downstream 233775 7961774 ~ 7967990 (-) False LOC113528501
XM_026917088.2 mRNA downstream 233775 7961774 ~ 7967990 (-) True LOC113528501
XM_034310213.1 mRNA downstream 233896 7961774 ~ 7967869 (-) False LOC113528501
XM_026917091.2 mRNA upstream 707 8204060 ~ 8209776 (-) True si:busm1-163l24.3
XM_026916462.2 mRNA upstream 22944 8226297 ~ 8236622 (-) False atxn7l3
XM_026916461.2 mRNA upstream 22944 8226297 ~ 8236621 (-) True atxn7l3
XM_034310101.1 mRNA upstream 22944 8226297 ~ 8236243 (-) False atxn7l3
XM_026916495.2 mRNA upstream 34797 8238150 ~ 8248789 (-) True ubtf
TU245460 other downstream 770693 7425730 ~ 7431072 (-) False natd1
TU245462 other downstream 770693 7425730 ~ 7431072 (-) False natd1
TU245466 other downstream 770693 7425730 ~ 7431072 (-) False natd1
TU245410 other downstream 879803 7318603 ~ 7321962 (-) True G207231
trnac-gca_20 other downstream 927388 7274306 ~ 7274377 (-) True trnac-gca_20
XR_003402917.2 other upstream 46532 8249885 ~ 8267638 (-) False slc4a1a
XR_003402976.1 other upstream 81121 8284474 ~ 8284592 (-) True LOC113528661
TU246334 other upstream 504601 8707954 ~ 8713318 (-) True ndufa4l
trnav-cac_10 other upstream 984167 9187520 ~ 9187592 (-) True trnav-cac_10
TU246677 other upstream 993143 9196496 ~ 9203640 (-) False dnal4a

Expression Profile