RNA id: XM_026917132.2


Basic Information

Item Value
RNA id XM_026917132.2
length 3072
RNA type mRNA
GC content 0.46
exon number 13
gene id cyth1a
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14534573 ~ 14601007 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATACAAGCTTCACTCTCTGTtcctctcgctttctctctctttattaaCATCATTTCTGGACCAAGACTGTTACTGAAGGATCTTTTTCACTGCTGCTGGACCATTGTCTCTGGACTATTTAAGGGATGTATCTGTTATACAGTTATTCTTCTCATCACTCACCAGAATAGAACAGTAATTTAAGAAGTACACCAAGATTGACTGAAGAAGCAAAATTCTTCTCAGGATTAGACAAAACAGTGCCAGACGACCTCACGCCCGAGGAGCAGCAGGAGCTGGAGAACATCCGGCGACGCAAgcaggagctgctggaggacATTCAGCGTTTGAAGGATGAGATAGCCGAGGTGACCAGCGAGATCGAGAACCTGGGCTCCACTGAGGAGAGGAAAAACATGCAGAGGAACAAGCAGGTGGCAATGGGCCGCAAGAAGTTCAACATGGACCCTAAGAAGGGGATTCAGTTCCTGATTGAAAATGATCTTCTGAAGAACACCAGCGATGACATCGCTCAGTTCCTGTACAAGGGCGAGGGCCTGAATAAGACAGCAATAGGGGACTACCTCGGAGAGAGGGATGAGTTCAACATCCAGGTGCTGCACGCGTTTGTGGAGTTGCACGAGTTCACAGATCTGAACCTTGTTCAAGCGCTCAGGCAATTTCTTTGGAGCTTCAGACTGCCAGGCGAGGCACAGAAGATCGATAGGATGATGGAGGCTTTTGCCCAGCGCTACTGCCAATGCAACCCGGGAGTCTTCCAGTCCACTGACACGTGCTACATCCTTTCCTTCGCCATCATCATGCTGAACACCAGCCTTCACAACCCCAACGTGAAAGACAAGCCCACTGTGGAGCGCTTCATCTCCATGAACAGAGGCATCAATGACGGCGGAGACCTACCAGAGGAGCTGCTACGAAACCTGTACGAGAGCATCAAGAACGAGCCGTTCAAAATCCCAGAGGACGACGGCAacgacctcacacacacattcttcaacCCTGACCGGGAGGGCTGGCTGCTCAAACTGGGAGGTGGACGTGTCAAAACCTGGAAGAGACGATGGTTCATTCTCACAGACAACTGCCTTTACTACTTTGAGTACACTACAGacaaagaacccagaggaatcATTCCTTTGGAAAACCTGAGCATCCGAGAAGTGGAGGACAAGAAGCCGAACTGCTTCGAGCTCTTCATACCGGACAATAAGGATCAGGTGATTAAGGCGTGTAAGACGGAGGCGGATGGGCGCGTGGTGGAGGGCAATCACACATTCTACCGCATCTCCGCTCCCACCACTGAGGAGAAGGACGAGTGGATCAACAGCATCAAGGCGGCGATCAGCAGGGACCCGTTCTACGAGATGCTGGCTGCCAGGAAGAAGAAAGTCTCCTCTATGAAGAGGCACTAAACCTGCTCAGGGCGATTCAGGGCTGTGTGAGTGCTCCCTCTAGTGGAGAGAACTGACACCTTGACTGGGAGGATGAGACTGGTCTCCTTCCCACTGCCTACCCCCTTTCAATAACGTAGTGTCTTTACTGGGACAGAATGGGGTTTGAGGACTAAATAGGACGTTGGAGATTGAAAAAAGCCAGGATTAGGCTCTTTAGTGCCCAGCAGGAACTGTGCCTCTGCTCCTCTTCCTGTTTAAATGTCCCTCACCTCTCCTTCacctcagtgtctgtgtgtgtgtgtgtgtgtggatacgtgtgtgcatgtgtgaaggGCATTCTGTTTCAGGCTCTTCTCTTGAAAATCCCCAAAGAATCAATCTCAGTCCTAATGCTAAACCAAAATGCACACTTTCTCTACCCTGTTTCTTTCTTATCTAGATTCTATCTATCCTGATCCTTgatctttcatttctctctctgtctctctttctccctctatctatctatctatctatctagctcgCTCTCTCTTTTAAACATGTCTTaaacgtacacacacacacacacacacacacacacgttctcgTTTAATCAGCAGGTCTGACAGAATGTGGGTTACCAAAAAAAGGCCTCTCCTTGATTTCAAAACAGGAAAGACCTTCTTGTATGCTTTTTTTCGTTATGTACAGGCAATAAgtgtattttttacatttctatatCCTCTGTatattctctttcttctctcgtCAATTTGACAAATGTCACTGTAAAGCACCACATGGCTTTCATGAGAACTGGAAGAGGCGGTGTTTAGTGTACACAATGTAGGATGGGAGGCAGATTTGCTCATACACTCTCAGGCCAAAAGCaggtggacacatgaccatcacacccatatgtgattcatccccaaactcttgccacaaagttgtaagcacacaatcgtctttgtatgctgtatcaTTAAGAtctcacttcactggaactaaggagcctaAACCTGTTCCGGCATGACAGTACCCCCTGGGCATGCCGACTAACCGGCAGGCCTTCTCGCTCATCATCAGTCCCCTTGCTCTTGTATCTGAATGCTCCAGCTCCAAATGAATGCCCATagatctggaatgggatgttcaacaaacacatatgggtgtgaaggtgtccacatacttttggccatatggtgtatgtcAAGATAAGGATGCTGGtgtaggttttgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtgtgtgggcTCCTCCAGCTTCCTGTATGCTAAAAGGCCGAACTGTTCTAGAAATAGCCCCTTTTTACCTGCCCTGACAAGAGCGCATGCTTTAACTTCACGCTTTCCTTTCTATTTCCTTCTTTACAATTTTACCAAGCTAGCAGTTTCCATTCTTTGAGCAAAGTCGTACATCTGAGCAGTATTGGTTTATTTATCAAGGATGTATATACTTCAGTGTATAGTGAGTATCtttctgcattttatataaatatgtgtgtgtagcaaATACATTGTTAGCTGAGTgccattttttccatttttttttttttttttttttttttttgttcctcttgAAAATGTACCTTTGGCCTCACAGATGTGTGTGAGCTCAGCCATTTTtggtaaaaaacaaaattacaaaataaaatctaaacacCAAA

Function

GO:

id name namespace
GO:0030155 regulation of cell adhesion biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0005886 plasma membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250078 lncRNA upstream 7656 14562520 ~ 14563021 (+) True G211101
TU250048 lncRNA upstream 88661 14481813 ~ 14482016 (+) True G211076
TU250028 lncRNA upstream 104003 14466438 ~ 14466674 (+) True G211058
TU249994 lncRNA upstream 136622 14433827 ~ 14434055 (+) True G211032
TU249993 lncRNA upstream 137382 14432370 ~ 14433295 (+) True G211031
TU250095 lncRNA downstream 3710 14604717 ~ 14692759 (+) True G211117
TU250097 lncRNA downstream 18222 14619229 ~ 14621407 (+) False socs3a
XR_003402940.2 lncRNA downstream 42709 14643716 ~ 14644243 (+) True LOC113528421
TU250211 lncRNA downstream 113664 14714671 ~ 14714875 (+) True G211208
TU250263 lncRNA downstream 237283 14838290 ~ 14843289 (+) False LOC113527943
XM_034309828.1 mRNA upstream 43148 14501308 ~ 14527529 (+) False usp36
XM_026916947.2 mRNA downstream 18197 14619204 ~ 14621788 (+) True socs3a
XM_026917065.2 mRNA downstream 277959 14878966 ~ 14899732 (+) True hid1a
XM_026917066.2 mRNA downstream 277959 14878966 ~ 14899732 (+) False hid1a
XM_026916009.2 mRNA downstream 311182 14912189 ~ 14920677 (+) True ush1ga
XM_026916008.2 mRNA downstream 311182 14912189 ~ 14919361 (+) False ush1ga
XR_004579399.1 other upstream 1077827 13475828 ~ 13492850 (+) False zgc:158403
XR_003402925.2 other upstream 2382088 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 2992854 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 3033512 11537047 ~ 11537165 (+) True LOC113528662
TU247339 other upstream 4152796 10412984 ~ 10417881 (+) True G208781
trnar-ucu_8 other downstream 1212235 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 1317210 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 1539323 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 2486284 17087291 ~ 17109275 (+) False srl
XR_004579361.1 other downstream 3583012 18184019 ~ 18341937 (+) True LOC113528485

Expression Profile