RNA id: XM_026917137.2


Basic Information

Item Value
RNA id XM_026917137.2
length 3746
RNA type mRNA
GC content 0.44
exon number 6
gene id nfe2l1a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9477811 ~ 9488541 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgttccAAAAATCTAAACGATGCATGTTTGTTTCCGGTTGTTTAAAACAAAGGCAGCACTGGCTTGTCTAACAGGGAGAAAAAAACGTAACTGTTGTGTTATGGCGTGGAGCTGGGAGGGCTGATTACTGAGCAGCCACTCAGCACATAAATACACACCCCCTGTTACAGAGCGCAACACTAAAGCCAGCTCGCCGGTAGGAAGAGCAAAAAGCTGCCCTAACTTCTCATAGCTGGAACTCCTGTACCGAGGACATTGTGAGACACGTCACTTTCTGAAAAACAGGTTTGCTCAGTGAAATCCACTACTGCATCCACCATACTGCTGAAAAAGATCCCTCCCCACTGTGTGTTTTCGAAGGGCCATGCAACCCCTGAAGAAGTACTTCACTGAAGGCCTAATTCAGGTGGCCATTGTCCTCAGTTTAGCTGGGATGCATGTAGATGTGGATCCTTATCTTCCTCCTCCACATAACATCAATATCCAAAGCCCAGATCTGACCCAGACCCAGTCCAACAACTTCCAGAACTCTCCAGAAGGATATGGTCTCCACATGAAGAGTCCAGATCTGGAGGCCTATGTCCCAAGTCCCAGGTTGTTGCATTGGGTACGCTCTCTGCAGCACCTGCACATTCCAACAGCGTATCTCGAGGCCTGGCTGGTCCACAGCGAGTCTGACAACAGCGGGATGACTATACCTAGCCTAACTGGTTCCTGGGATGGTGGTGATGAGCTGGTGGACATGGAGGACTCAGCAAGTTTGACCATGAGGCTGGGAGGTGGAGGGATTGGAGAAATGGGGCATGATGCAGTTATGGATGATGGAAGTTTGGAGGTGGAGAACCCACTCTCAAGAAGTCAAATGGATAGTGAAGACATTAAAGAGGAAGCAGATGCATTTTCACTATGGCAACAAGAACTCAACCAAAATACCCACCAGGATCAGCTACTTCAAGGACAAAATCAATACTTCAGTCTGCTTAATGAAGACGACGAGGATGAGTTCATGGTGGACAGATGGCGGCATGCAAACCCATTTCATAACCCTGTGACCAGCATGCAAGGGGATGTACAGTTTGCAGGTTTACAGGAGGATAACTCTTCATTTACTGAGGAATGTCTGCAATTACTGGAGGCTGGTTCCCGCCTACGACATGATCAATATTTGGCGGATCTTGATCCAGTGAGAGCTGATGAAGACCCACTGCAACACCACAGGTCTGTTTTCTCCCCTCTGTTACCTCAACATGAGCCCGTACTGGACCTAGAACAGCAATGGCAAGATGTTTTGGCTGTCTTGGGACCACAGGACATGAATGCAGATGACTTATTGGGCAGTTCTCACCCCAATGACGGGGAAGGAGCAAGAGAAACAGGAACTTTGGAGAATACCATACTGCAAAATCTAAGCCTTCATCAACCTAATTTTCCAAGATCCAGTCAGATCTCATTTGCAGGCAACATGGCCATCAGAGAAGACAGTTACCTTTCTAACCAGAACGATACCCCTTTGAATGTTTCAAACTCCTCTACTGTAGATTTGAATTGTAATGACCCTGACATCATAGACTTTCTCCTTTCTCATACATCAGACAGCTCAAACATCAGTATACCCAGCTTCTCTATAGAGGAACCAAGTCAGTCAAGTCTTTTTGGTCCTCTGTTGAAAGAATCCATGCTTGATGAGAATGTTCTGTTGGATCTAGCACTGGAGAACGGATCTGGCCAGTCAGAGGTTTTCCAAAAAGACGACCAAACAGACTCTGACTCTGGACTCTCCTTGGACTACAGCCAAAGTCCCGTTTCCCCAAGTAGATCTGAATCCTCATGTAGCTCATCGTCCTCCAGCTCGTCATCATCAGTGTCATCGACATACTCAGTTAATGAGGAGGGGGCTGTAGGATACACCCACATCAAAGAGGAGCCGATGGATGAGGAAGGAGCTGTTGGAGGTTACACcccagaacaaaacaaaatgtgctaCACAAATCACCTGCAATTCCAATATTCACCCTGGCTTGAGCATATAGGCCATGATCACACCTACAACCAGCCCCAATATACCAACCAAAGAAAGCCTCCCAAAGAGCACTCAGAAGAGCCTCTGGAATATAAACTCCAAGACAAGCTATGTACCAGGGATGAGAAGCGAGCGCGTGCCCTGAGGATTCCATTTTCAACTGACTATATTATTAACTTGCCTGTTGAAGAGTTCAATGAGCTCCTTGCCAAGCACCGCTTAAGTGAGGCTCAACTCACACTTATTAGAGACATTCGTCGTAGGGGCAAGAACAAAGTCGCTGCGCAAAACTGTCGTCGCAGGAAGCTGGATATCTTACAGGATTTGGAACATAGTGTTGATGGCCTGCGGCGACACCGTGCAAGACTGCTCAGGGAGAAATCGGAAGTTCTGCGCTCAGTTAGAGAGATGAAACAACGCCTTAATGACCTCTATCAAGAGGTGAGGAGTAGACTAAGGGAGGTGGAAAGGATTCCCTGCTCAGCCATGGACTTTCCTCTGCAACCGGGCAATGACAGCCATGTTTCAAAATCCAGACGGAAGTCTGGCAAGAAGCAGAAAGACAAGGAGTGAAGATAAGACTGAGTAATTCATGCTCTGTTTGCGCCTGCAAGCCAGACGTTGCAAGATTCAATGGAGAGGTCATGATAGAAATTACCTAACCATTCTTTTTACAGTGGAGTTGACTTCTGCTGTAATTTAGTGGCTAAAAATACATCCAGCTGCAGTTAAGTGATGTGGATGGATAAAGGTGTGCAGTTGATCATAAGGAAGCAAAGCATCCACATTAACAGACATGTATTTTTATCAGTAAATCAGTGTTTGTAATTTACAACAAACCTCAAATCTCCATGAAAATGGAGAGATTACTGGAGAATAACACTGGATTAATCCGGAAGTAGTGGGGTCTGGGCACCTCAAgtgggtctgtgatttttttttttttttttagaatggaGGAAATTACAAACCATCAtatcaaaattatatttattattgagttcttacaGTTATTTGTCCATTAAATCTGTCTCATTACTTCAGTAAATTTGACCCAAatctcaataaattaaaaacaagtgGGCCTATAAATAACGACAATCTGAATCTAATATATAGTTCTATGTTCAGTGGAACATTCAGGAATGAAAAGCTCTCTGTCTACAATAAATAGCtataacattattatacacGTGTGAATACTGAGCATAATATTACTGTGGtgctcataaaataaatctgccgggtctgtgaaatgtattttacagttaaaggggtccctggttGCAAAAGGTTTGAGAGCTCCTGTCCATTCTCTGGGTTAGGAGAACAGGAATGGAAGAACTGTAAAACAAGTTGCTATTTTAGAAGATTGgaataaacaagtaaaaagtCATGGATCCCAGAATTAATGCAGTGTCTATCCTTGCCTTACTGTCGGTCAGGCTTTAGGTCTAGTCCAGGTGTTATTCAGTGGTGTTATCTCTAGAACCAGTTTTGTGattcaacaaacatttttaataatgtcaCTGGTTAGGCACCATGTTTAGGCATTGTGCttattttttacttgttttctaCTTTCTCTGGTATACTGTATGAATCAGAGACCTTAACATTGTATTGATCAGAGTTTTGCATATGCCCTATGACATTTTCATACTTTTTGTGTGAATTATTGAAGACAAGCTGGGcttgttttctgtgtttgatTAAAGATATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246749 lncRNA upstream 102184 9374940 ~ 9375627 (+) True G208326
TU246759 lncRNA upstream 103358 9373250 ~ 9374453 (+) True G208336
TU246625 lncRNA upstream 308795 9168275 ~ 9169016 (+) True G208229
TU246583 lncRNA upstream 352021 9115188 ~ 9125790 (+) True G208197
TU246505 lncRNA upstream 430395 9045645 ~ 9047416 (+) True G208133
TU246828 lncRNA downstream 6474 9495015 ~ 9498049 (+) True G208382
TU246850 lncRNA downstream 67071 9555612 ~ 9555814 (+) True G208403
TU246885 lncRNA downstream 244067 9732608 ~ 9734047 (+) True G208430
TU246862 lncRNA downstream 248468 9737009 ~ 9738866 (+) True G208415
TU246950 lncRNA downstream 257744 9746285 ~ 9748010 (+) True G208472
XM_034309941.1 mRNA upstream 76973 9390424 ~ 9400838 (+) False si:dkey-110g7.8
XM_026916101.2 mRNA upstream 76973 9393743 ~ 9400838 (+) True si:dkey-110g7.8
XM_026916102.2 mRNA upstream 76973 9393743 ~ 9400838 (+) False si:dkey-110g7.8
XM_026917276.2 mRNA upstream 165029 9300101 ~ 9312782 (+) False csf2rb
XM_026917277.2 mRNA upstream 165029 9301142 ~ 9312782 (+) True csf2rb
XM_026916970.2 mRNA downstream 290982 9779523 ~ 9781922 (+) True eve1
XM_026916012.2 mRNA downstream 318257 9806798 ~ 9811581 (+) True atp5mc1
XM_026916900.2 mRNA downstream 325543 9814084 ~ 9827009 (+) True ube2z
XM_034310315.1 mRNA downstream 352349 9840890 ~ 9879885 (+) True igf2bp1
XM_026916952.2 mRNA downstream 398243 9886784 ~ 9893496 (+) True si:dkey-225f5.4
TU246534 other upstream 414496 9061565 ~ 9063315 (+) False nupr1b
XR_003402909.1 other upstream 575134 8896618 ~ 8902677 (+) True LOC113528069
trnas-cga_1 other upstream 1469544 8008186 ~ 8008267 (+) False trnas-cga_1
TU245701 other upstream 1624302 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 2178127 7299613 ~ 7299684 (+) True trnac-gca_21
XR_003402918.2 other downstream 455765 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 860861 10349402 ~ 10417881 (+) False G208781
TU247338 other downstream 883874 10372415 ~ 10417881 (+) False G208781
TU247339 other downstream 924443 10412984 ~ 10417881 (+) True G208781
XR_003402977.1 other downstream 2048506 11537047 ~ 11537165 (+) True LOC113528662

Expression Profile