RNA id: XM_026917140.2


Basic Information

Item Value
RNA id XM_026917140.2
length 4338
RNA type mRNA
GC content 0.44
exon number 7
gene id pdgfbb
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9321259 ~ 9335630 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTAATCAAGACGGTGCGGGTGACACGCGCGCAGCGCCGCGGACTGATAAGCCTCCATGGAATAGAGAAAAAACGTTCATGTTTGCTCCAGTAGAGACCGATACGAAGAAAAGTAGTACAAGTGGATCCTGATGCGTCATGCAGCATGGAGTGACTGCTACAGAGGGAAGTCTATAAAACGCTAACGATCGGCGGAGTGGACATTAAGAGCAAGAATCTACATTTCGGAAAACTTAACTTTGCATGATCTGGTcacttttctttgctttttgaAAGTGGGGAAAAGTCTAGTAGACAGACAGTTAGCTTAAATTATGCGTGTGCGTTTCTCAGCATTGGCCTGTGCTTAAAAGTCAATTTGGAGATTCCTGAAGAAATTTCTCTCCTCCGGATTTTTGCATTTAGTCTTCGGTTTTAACAGCTACTCGATTTAATAAGCAGACAGACTTTACTTCAGAGAGACCGCTGCAACGTTACAGTAAACCCTGTGGAGAAGAATCTGCGTGTTTGCTGACTGAGTGGAGTTTTTGTAGCGCGCGCCGCTGGTTTCCTCGCGCGCCGGTGTGTTTCAGTAGCGGCTGTGCGCTCGCGGGCCGCTGTCCCGCGCTCCGAGTGCTGAGGAGagaagagcagagcagagcagagcagagcgaGCGGGCCGCGCGCGCCTCTCAATGCGGCGGAGCGATGAGCACTGGGCTCTGCTGGCTGCGCGCGCTGCTGCTCGCGGCGTGTCTGTGCTTCGGCGGCGCAGAGagGGATCCTCTCCCTGTAGCTCTGGCTGAGCTGATGAAGAGCGGCTCTGTCTCCTCCACAGAAGAtctgcagctgctgctgctctctgaCTCCGTAGatGACGATCCAGAGAGCGACCATGCCAACAATACCAACAACCGGCTGCCAAGGAGCCTTCTGGATGCTCAGCCAGCACAGCAAGCCCAGTGTAAGGTGAGGACAGAGGTCATGGAGGTCACCCGCTCTATGCTGGACCGTAGCAATGCTAACTTTCTGCTATGGCCACCATGTGTGGAGGTGCAGAGATGCTCTGGTTGCTGCAACACAAAAAACCTTAAGTGTGTAGCTGTACTCACTCACACGCGCTATCTACAGGTGATGAAGATCCAGTATGTGAACATGCGCCCAGTTTACAATAAAGCCATAGTCTCAGTTAACGATCACGTGGAGTGCCGCTGTCAGCCTGCTCCTCGTCCAGCCTCCCGCAGAAAGTCTCCTGCTCACAAACAAGAAGTAAGAGATCGCTCAGGTAAACCTCGCTATAAAGATGAGCTTCACCGGAGAGATGAGCTTAAACCCAACCAGAGGCTTAAACTAGAGGATCTGCTAAGCCACAGCTGGCTGCCCCTAGAAAATGGACACGATGCCTGGAGCCATAATAAGACGCACCACGGAAAGAGCAGAGATCATTCCCTTGGAGATGGGAGGaagtataacagcagctcgaaTGGCACAAATGGCTGGTCTTCTGAGAAACTGACAAATCCTCTGCCCAGTCACATTAAGAGAGAAGATACAGGTATATTACTACACAATGTGACAAgggcaagagagagagtgaaagagaaagaggccAAAGAtgtagaaatacagaaaaacagtACAGTAAATGATGGTAGGCTGACTAATCAGTCATTAGTGAATGGGGTCAGCCCCACTGaaataaccaatcagattccacaGCATGAGTCAGAGCTAATACAATGTGCAGGCCACAGCAAAAGTGCCGAGGGCAGTCAAGAACACAGAAATGAGACTATTTCCCAGATGGAGACCACCCAGAATCAGACACACAGTGAAGCACATGTTGGGCAGACCAATCAGACTATGGTTTCTAAAACTGCAGATAAAACCAATCAAAAGCAAGGCCATGCCTTTAATGCAGAAAAAGAACCTAGTACTAGAATAAAAGGAAATGAGACCCCAGAGATGGTGAGCACTCAAGAGGAGACAGAGGGGACCAGAAGCAGGTCCACTTTGCTGAAGGAAAGGAAGGCTttagaggaggagaaagaggagttGCTGTTACTTCACAGACGCCTTGATGAAGAAAAGCACAAACATTTCCTGAAAACACAACTACACAGTCAACATGAGGACCAAAAACAGCACCAGCTGCACCACAAACCTCAGCAAAcccacacaactacacaacggACAGAAATTAGAACAACTACCCCAGTCAGAGTgtccactccacacacacatccccgACTGCCCCCTCGTCCACCAAAGAGATTGAGGAAACATCGCAACCGCATAAGCAAGGCTGTCATGAGGGCCATGCTCATGTAGCATGCATAGGTGAGATGTGTGTAAGGTGCAGTACCTCTCCAGATCATTGCACTATCctgaataatataatttattcatgTCTTCCTGTCTATGGAGATCCACAGCCTCTAGTACTAATCCTCATGCAGTAACCCTGTTTCTGGGAGCGTCTGCGTTTGGCAGAGATCTAGGGGCAGAGCTACATTCCTACCATATTCCCCTGACATAAATAACAGTGATGTTATTAAAGGGGACAGAAGACATTAAGACAAGCAGAAGATTTGCCCTGGATTCAGACTGACTGTCCAGTAGTTGCTACAACTCCTCAAAACTGCTCTGAAGTCCTTTTCCTAAGTTATGCTCCAAGTTGGAAACCTGCCATGACTCTGTGGAACAATGGAGCTGAGGGAGTGGGCTTGGGAATGTGTCACTGAAACTTTTAGGATAGAAAAAGACATGCCTGGAAGtctagaatgaaaaaaaatcctctagaataaaaaaaagaaaaacactggaCTTTAGAAGATTTTTGGAATGAATGGGGCTGGTCTGTGGAAacactcagaaataaaagagaCTGGTCTAGAAGCTCCCTAAGCGCTCTGAAAATGCTACTCTAGAGGCTCATTCAAATGGAAAAGACTGGTTTAGGAGATCTGTGGAGTGGAGATTTTGAGCTAAATGCTCTCTGGAATTAAAACATGAGTCTGGAGAAGATctctgaaaaaagaaaggctgatCTAGAACTCTTTTGATTGAAAACACTGGTCTATAGAAACTGAAATGGAAGAGACTAAATAAAAGTACTACTCTTGTAGCTGCTTCAAGTGGCTTCTAGTTTAGTTCTATAATGTGGAAATGATCAACTAAATGTTCTATGGATTGGTAAAGAGTGGCTTAGACGATCTGGAGGAATGGAAAGACTAGTCTAGAAATAAAGTGGAATAAAGTTCAGTTTATATTCTCTATAGATTAGAAAATACTGGTCTAGAGGATCTCTGGAAATAATTGAGTAGTCTTAATGCTCTCCTAGAAGATTTCCATGATAAAGACTGGTAAAGAAACTTGTTTTTAATCAGTAAGCACGTtataagagagacagaaaaacagagcaaCTCCCATCCAACTGATATAACCAGATATATCCATACAACTGACATAACCAGTTTCTCTTCTAACCATAATCACCAGATCCACAGCTAGTTTGAGTGGTGTACTATGCCATaaatttgtagaaaaaaatggttcCATCTTGCACTCTATATCAATTCCTGTCCGTCCAGGGGCACCCTTAAAAACACAGTGTAGAACCCATTATTTCTCCATCATGCAGGAGTAGATCACCTTTAGGAAGCTGAGAACCCTTAACTATGGAAAGAAGCCTTGAGGAACCCATTTTATTGGTAGCATGTAGTCATATCTGTGGAACATAGTACAGAGCTGTCAGTGTCTGAGACATACTGGACAGCTTCACCTCATCTATAGTTGTGAGCTAGATATAGATTAACACAAGTGTTTTcatttatccattcattcaGAAAGAGAAAGGTAAAGCAAAACGGAAGCGAGAAAGGAACATGGATATAACTCAAACAAATTTTCAGTGTTAAACAGTGTTTCCAGTATTTCTGgattattaaacataatacAGTATTACATAATACAAGTCACAACCACTTAACAAATCATATACaatacataaacacagcaacaatactgttttaattttcttatttaattttcatattatttaatttgactGCTAACACTGGAAATTCTCAGATGGCAAATAAAGGCTTGCAGTTCTATTGTATTAATATGGACCTCTTGAAATATGACGGTGCTATGTAATGATAAGAAAACAGCTTTAccattaatgttatttattcttttatgatTGCTTTGTTAttagtttttcttcattaattttacttatttgtttctCTGCATTCTGTTAAaggtgtatttgtgttttttcgGCTCTAGATGTATGTGAGGCAGTGTTTTGCACCGCAAAAGGAATATGAATAAAGAACTAAACTAACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246658 lncRNA downstream 197378 9122196 ~ 9123881 (-) False LOC113527952
TU246570 lncRNA downstream 218133 9102911 ~ 9103126 (-) True G208189
TU246536 lncRNA downstream 257752 9061580 ~ 9063507 (-) True G208158
TU246531 lncRNA downstream 290281 9030525 ~ 9030978 (-) True G208153
TU246529 lncRNA downstream 296276 9024761 ~ 9024983 (-) True G208151
XR_004579419.1 lncRNA upstream 106356 9441986 ~ 9446104 (-) False LOC117598997
XR_004579418.1 lncRNA upstream 106356 9441986 ~ 9446050 (-) True LOC117598997
TU246838 lncRNA upstream 158993 9494623 ~ 9505750 (-) True G208391
TU246919 lncRNA upstream 394239 9729869 ~ 9731447 (-) False hoxb8a
TU246954 lncRNA upstream 410866 9746496 ~ 9748039 (-) True G208473
XM_026916054.2 mRNA downstream 35319 9247782 ~ 9285940 (-) False pvalb6
XM_026916055.2 mRNA downstream 49357 9247782 ~ 9271902 (-) True pvalb6
XM_034310188.1 mRNA downstream 90011 9208211 ~ 9231248 (-) True cbx6b
XM_026916049.2 mRNA downstream 117770 9196639 ~ 9203489 (-) False dnal4a
XM_026917281.2 mRNA upstream 37522 9373152 ~ 9379596 (-) False tmem150b
XM_026917279.2 mRNA upstream 37522 9373152 ~ 9378249 (-) False tmem150b
XM_026917280.2 mRNA upstream 37522 9373152 ~ 9378249 (-) True tmem150b
XM_034309943.1 mRNA upstream 45044 9380674 ~ 9391360 (-) True adsl
XM_034309942.1 mRNA upstream 45044 9380674 ~ 9390750 (-) False adsl
TU246677 other downstream 117619 9196496 ~ 9203640 (-) False dnal4a
TU246678 other downstream 117619 9196496 ~ 9203640 (-) True dnal4a
trnav-cac_10 other downstream 133667 9187520 ~ 9187592 (-) True trnav-cac_10
TU246334 other downstream 607941 8707954 ~ 8713318 (-) True ndufa4l
XR_003402976.1 other downstream 1036667 8284474 ~ 8284592 (-) True LOC113528661
TU246802 other upstream 74174 9409804 ~ 9419584 (-) False prr15la
TU246803 other upstream 74174 9409804 ~ 9419584 (-) False prr15la
TU246806 other upstream 74174 9409804 ~ 9419584 (-) False prr15la
TU246804 other upstream 77971 9413601 ~ 9419584 (-) True prr15la
XR_004579423.1 other upstream 130850 9466480 ~ 9474478 (-) False copz2

Expression Profile