RNA id: XM_034309786.1


Basic Information

Item Value
RNA id XM_034309786.1
length 3830
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC113528548
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19826650 ~ 19842682 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctctgagtgaaGGCAGGTTTCTCTCAGAGTGTAAATGTCCAGTGCAAGCAGCAGTTCGCTCTGTAATGGATCTATAATGGATGTGTGATGGCTGTATGATGACTGTATGATGAAAGTATGATGGCTGTATGACTGATGTGTGAATACGATGCAGATGTGATGTAAATGTTGTCCTGCACCGTGGGATGTTGGTTCCCACCGTAAGGGAAGTCCTGCGCATGGGCTGAATGCACCAGAATATGGGCGTGAGTCAGACACGCGAGTTGCCGGTGTTTGATCAAGATGAAGACGTGAACTTTGACCACTTCCAGATTCTCAGGGCCATCGGGAAAGGGAGTTTTGGTGTGTATAGTGCAGAAGCGTGACACAAGGAAGCTGTACGCGATGAAGTACATGAATAAATACGCGTGTGTGGAGCGTGACGAGGTGAGGCACGTATGCAGGGAGCTGCAAATCCTGCAGGAGATACAGCACCCATTTCTTGTCAACCTGTGGTACTCATTCCAGGATGAAGAGGACATGTTTATGGTAGTGGATCTGTTACTGGGTGGAGATCTGCGCTACCACCTGCAGCAGAATGTCCAGTTTAAAGAGGAGATAGTAAAACTATACATCTGTGAGCTAGCATTGGCACTCGGCTACCTACAGTCCTGCCACATCATCCACCGTGACATAAAACCAGATAACATTCTGCTGGATGAGCATGgTCATGTCCACATCACAGATTTTAACGTTGCCACATTACTAAAGGACTCAGCAAGGGCTTCATCTATGGCAGGAACCAAACCGTATATGGCCCCAGAGATGTTCCAGTCATTTGTAGATGGTGGTCCTGGTTACTCTTATGCTGTGGACTGGTGGGCTTTGGGCATCACGGCATATGAGCTCTTACGAGGATGGaggcCATATGATATCCACTCCAGCACAACCACTGAGGATGTCATCAGCATGTTCCGCTGTGAACGTGTACGGTATTCATCCTCCTGGTCTAATGCCACGGTGGCTTTGCTGCGCCTGCTGCTCAATAAAGACCCAGAGATTCGGCTGTCGTGTGTATCGGACCTTCAGCGCCTTCCGTACCTGGCGGATATGAACTGGGATGCTGTGCTGGAGAAAAGGGTTTCACCAGGATTTATCCCCAACaGAGGACGTCTGAACTGTGACCCGGTGTTTGAGTTAGAAGAAATGATTCTGGAGTCTAAGCCActgcacaaaaagaaaaaacgacTGGCCAAGAGCAAACACACCAACAAATcactgccaCCCCACATGCAGCAGCGTCTAGAAACCGTCAGAAAGGAGTTTGTCATCTTCAACAGAGACAAGTTGCAGAAGCAGAGTGACAGTGCAAAGAAAGGATCTTCACTAAAAAGACAGGACAAACTGCAGGAAGGGCATAGCAACAACGACAACAGCCACACTGTCAAagcaaaatgaaaacacacGCAGACTTGGTGAAAACATTGAGTCCAGATTCACACTGAACAACACCTTGACGTCCTTCTACAGCACCATCCTTCATACACACCCACTTAGCAGAACACGCAGCACAAAACCAGACCCTTTGCCTTACTACaatgactgtgtatgtgtgtgtttttattttttaaaaatgactgaacGATTGCTATTTGGTAGCTTTCAGCCGAATAGCATTAGCAACTATTAGCATTTATTAGTGTCCTGCAGCATTCCGTCTGATTATGCAGTTCATGTCTCTGTTACTGTGTAAATGATgtgtttataatacattataatatgtatgtataattgcatttttttttgcatgttcccATGTTTAcgttttttaaagaatgaaatcACTTGTCTAGAGGCAAAACCATTTGATTACTACctgttttgattcattttagccttccaaaaaacaacattaattatgtattataaaaTGATCGTGTTTTGACTTTAAACATGGATAGAGAATTTTGAAGAGAATAAGTGGGGAAATAACCACTGAAATTGATAATTAGTGCTATCAGTGGCCAAAACCATACCTTAAGCTTCCAtttcccatttttatttttgacataaTATGTTCACAAGGGGACACTATCAGTGTTTACAATATAGCTTTGAAATCGGTATGAAAACCAGACGTTGATATCACCAGCACTACTCCTGATTCAACGTTACCAAGCTAACATTACGTTAAATGGGCAACTCAACCGGCAGGTACACGTCCATAGCTACTAATACAAAGGGTGAATTTGAAAAACATCAATGAAATTTGTTGAATGCAATCCAATTAGTAAGAactaacataaaaatatttttttactatttaagTATTTCCTTGTGTTCCTGGTAAAGGGTTAAGAGTCCTAATGCTATGCATTAAAAAGCTGCCAGTCCCTCATCTCCTAGGCTGAATGTTGGTTTCAAGAAACAAACTTTCAACTATTACCTTACTATGTCCAACTGCCAGTCATGAGCACTACCCAGTACTGAAGACTATGCCAGTGAGCGGGCTGACCCTGCAAGTGACTGCCTTCCGAACTGCTGGACACAAGTGCTTAACATGGAAAGCAAGACACAAAGTGATCATCCACTCCTGGCAAAGTGTTTCCTCAGATGTGGTGGCCACCTATACTATCCTGTCAGGCAATGAGAATGCAATAATCCAACTGCTGCATACCCATTAGCTGCGTGGACATGTGGGTATCCAACAACATCATCTCACAAACCTGGGACCCCTTCCATTGGCCTGGCCTTGGCATGCAAGTATGGAACTTCTGTAAACAATGCCCTGTCTACCAGTACACCTTGTCCCAGAAATAACCACCGGCTCCCCTTATGCCTTTCCCAGGGGCCTTACAGACTGCTGGATATGGCTAAAGAGGCTTGGGAACAGTGGCCTTCCTCCTCCTGATGGGTGATTTAATCACACTCAGCAGATGCAGAAACACACAGGCAACATCATGCCAGATCACACCCGGGAGACCCAGTGCACACAAAAGCAGACCTACAACCTTGATGCCCAGCCTTGAAGTTGAGGACCCTGAGGTTCTGTAACAATTTCAAGAGGCACAATAAGAACTCAGAGTTGGCATCTACCCAATGCCACtggtgaatgaataaatcagaAGGCTGGGGTGGTACACTTCTAACATGGACCTTACCCTTGGCTATTGCCATATCCCCTTGTGCCAAAATCTAACCCCAAAACAGGTTTTTCCATGCCCAGTGGATTCTGACAGTACTGGGTTCTGCCAGAAAGAGCAGAGAGGGCTGGGACAGGTTCAGTCCACTTTTTAAGGAGTTGACATGATAAACTTCTGCAACCTTCCAGCAGTTCCTGGACATTGTGCTGTATCCCAACCACTGCTGTAGTGCAGCCTACCTTGTTGTTGCTGCCAGTCAATCAAAGACCTGGGCAGAGCATCTCATGTACCTCCAGAAAgatgccctgtgtgtgtggctatACTATAAATGAAAGAAGTGTCACTTAGGGCTGGCTGAAGCACAGTACCTCAGACACAgtggagagcactgtctaacacatTGGTGCAAAGTCGTCCATAGGTGTTCAATTTTGTTGAGAGAGGccatactcatcaaaccaatCAGTGActcctcatgccctgtggatgggggcatttgtttccattttttttagttttgttagtTTTTGGGATTTCATTATTATCTACATTCTCTTCCTAGCTCCAGTGCAAACTGGAGACATGGTAtacatattgattttttccccaaactgttcgtCAAATAATTTTTGATGATGACATTTTGAAAGCAACTGGATCAATAAAATTAGTGGGGAAGAGGTGATGTGGTTAAGGTGAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579341.1 lncRNA upstream 33991 19784413 ~ 19792659 (+) True LOC117598770
TU253255 lncRNA upstream 111091 19698004 ~ 19715559 (+) True G213864
TU253224 lncRNA upstream 119800 19664704 ~ 19706850 (+) True G213834
TU253176 lncRNA upstream 195339 19630891 ~ 19631311 (+) True G213792
TU253054 lncRNA upstream 355294 19469862 ~ 19471356 (+) True G213678
TU253382 lncRNA downstream 30394 19873076 ~ 19911732 (+) False LOC113528458
TU253387 lncRNA downstream 69457 19912139 ~ 19912375 (+) True G213984
TU253415 lncRNA downstream 125326 19968008 ~ 19970156 (+) True G214012
TU253526 lncRNA downstream 229013 20071695 ~ 20181878 (+) False G214098
TU253520 lncRNA downstream 298733 20141415 ~ 20144597 (+) True G214098
XM_026916943.2 mRNA upstream 15759 19808963 ~ 19810891 (+) True msx1a
XM_026917162.2 mRNA upstream 57776 19743995 ~ 19768874 (+) True nsfa
XM_034309661.1 mRNA upstream 404257 19378853 ~ 19422393 (+) True LOC113528521
XM_026915985.2 mRNA downstream 17724 19860406 ~ 19885555 (+) True LOC113527852
XM_034310318.1 mRNA downstream 17724 19860406 ~ 19885555 (+) False LOC113527852
XM_026915987.2 mRNA downstream 17724 19860406 ~ 19885555 (+) False LOC113527852
XM_026915986.2 mRNA downstream 17727 19860409 ~ 19885555 (+) False LOC113527852
XM_026916954.2 mRNA downstream 45633 19888315 ~ 19900984 (+) True mcm7
XR_004579333.1 other upstream 513432 19301355 ~ 19313218 (+) True gng13b
TU252829 other upstream 681410 19144074 ~ 19145240 (+) True G213491
TU252614 other upstream 906778 18914726 ~ 18919872 (+) True smim22
TU252615 other upstream 906778 18914726 ~ 18919872 (+) False smim22
XR_004579361.1 other upstream 1484713 18184019 ~ 18341937 (+) True LOC113528485
TU253379 other downstream 63520 19906202 ~ 19910165 (+) False LOC113528458
XR_004579366.1 other downstream 91142 19933824 ~ 19953286 (+) False LOC113528304
TU253418 other downstream 135632 19978314 ~ 19981380 (+) True G214015
XR_004579430.1 other downstream 179827 20022509 ~ 20076408 (+) False LOC113528520
TU254301 other downstream 1497734 21340416 ~ 21349086 (+) True hopx

Expression Profile