RNA id: XM_026917165.2


Basic Information

Item Value
RNA id XM_026917165.2
length 2781
RNA type mRNA
GC content 0.43
exon number 5
gene id rab3db
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13410944 ~ 13422706 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGTGGATCAGTGTGGATTGGGAGGCTCGAGGCAGGGAAGGTGGATCAGTGTGGAGTGGGAGGCTCGGAGCAGGGCAACTGTCTGACACACCGCAGATCCGCGCGCTCTGCTGGGGTCCGCGTGCACGCAGCAGCCTAGCAACGGCACAGCACCCTCCCTGCTGAGCTGTAAATATCCGGTAAGACCAGCACAAGGCGGATTCTCCCGTTTCTCACTGTGAGGAGATGGCGACGGTGAACGACTCGCGCCTGCTGCAGCAGCCCTCTCAGAAGGACGCAGCTGATCAGAACTTTGATTATATGTTCAAGCTCCTGATTATTGGCAACAGCAGCGTGGGCAAAACTAGCTTCCTGTTCCGCTACGCCGATGACTCCTTCACCTCAGCCTTCGTCAGCACCGTAGGCATCGACTTCAAAGTCAAAACTGTCTTCCGCAACAACAAGCGGATCAAGCTACAGATCTGGGACACAGCAGGACAGGAGCGCTACCGAACCATCACTACAGCATATTACAGAGGAGCCATGGGCTTCCTGCTAATGTATGACATCACCAACCAGGACTCGTTCAATGCTGTACAGGACTGGGCTACCCAGATTAAGACATACTCATGGGACAATGCACAGGTGATTCTAGTGGGTAATAAGTGTGACCTAGAGGATGACCGACTTATTCCAACAGAAGACAGCCAGAGACTAGCTGATGAACTAGGTTTCCAGTTCTTTGAAGCCAGTGCCAAAGACAACATCAACGTGAAGCAGGTGTTTGAGCGGTTGGTGGATGTAATCTGTGAGAAAATGAACGAAACTATGGAGGGAGATGGTGGTCCACTCAGCCTCAAAGACTCCAACCTGCAGGACTCTCCAACTGAAGGACATAGCAGCTGTGCCTGTTAAAATACCAACCACACACCATCTTACTTGCATTCCACCCTACAAACTGCACCCTTGTCTCTGTCCCCCTGCCACACACTTGTCTTCAAAGACTTCAGACTAGCTCTCTGACTAAGACTTACTGTTCTGTATTAAGATGTGTTCTGATTCAGATTCTGTAAACCTTTCTCATATTTTTTCGATATCTGTCAAACCAGTATTCTAACTCAAATTcattcagccaatcaagtgAAAGTCTTTAGTCTGTACAGCAGTCTATATGCATGATGTCTCTAAAGCATTCCTGCTATCAGAAAAGGGGTGATTTGTGATTTAGCTAATCATAAATTCACAGTAGGTGGAAGCATTTTCTCTGAACTTGAACTAAGGTGCAGAGTGCCTTAAATCACTTAAAATCTTCTTAAACCTTGTTGCAGCTCATTTTAACTCCTCTCACGACTGCACCAAGAAATGCACAGGCTGTGTGTTAGCAGCTTACAGAGATAAACATCTGTCCATCCACACCCATCCATTTTCCTCTAGCCCTCACACTCTCTGTTGGTTGTGTCTCTCCTATCCTCTGAAAAAAAGCTTGGGAGAGCTCTGTGGCTTAGCCCACAATGGATGTGTTTGTGTCACATGCAAGTGGATAGCCCCATTTTCAACTGCCAATCTGTACCAGACTTGGCCAGTGTACTGTCTGTCTTGTTTAAAACTTTAGTTTTAGGAGGAACCACGTGTCATTGCACCAAGCGTGAAACCCAAATGAAGACAAGAGGAAgttaaaatttacagtaatatgatcatgttacatttcatgtcaaatatttttcttaatggGAATGATGGAAATGTTTATTCTAGTAAAAATTTCTAGTAAAATGCTGCATGTGGCTCAGTGGGAATAAATAGGGCACCATCACATAACCATTGAATTAATGTTCTAAACCTGTTACACTAAGTATTGAATACCTTGAACTCTTCCTGCTTTTTGTATTTCACATACAAAGCTCTCAGTTAAATGTCAGCTCTTTTCacaacatttcatttcagtataAATCCAGTCTCACTATTTTTAAGTATTACATTAATGTACAATCTGCTGAGGTGAACCTTATGGACTCAGTATGCTTTAAACTTTTAAGCTTTTaagtgttgtttttgtgtttaaaccATCAATGCATTGAGGCTGTAATGTATGATAAAGATCAGATGTATATGCTAAGGGCTTGTGGAGGTGAAAAAGAGGGTCATGTGTGTCACATGTTTTGTACTTGTAAaccttgtttttctttaatttgttacCAGTGTTTCTTTGTACAACATACCACCCATACCTGTGTCCAGATCACTCGTCACAGTTGTGAAGTACAGAAGAGAAACTGTACTGTTGTGTGGCAGAATCATTCAGTAAGTGAAAATTTTGCAGATCATATGGCTTGTATGCTTTGTATATGCAGGGACAGCTCTGAAACCTGCAGTATGGTGATGACTCAGGCTCTACTCATCTTTATATTTGTACTAAACTCTCATGTGATCAGCTAGTGCCATCATTGTGACAGAATGTACATATTGCCAACCAAAACCTCTGACATATTGGCTTGTATAAACCTTTCTGGTGTCAAGAATGCTTTCCAGGCCTAAATTATATCCTTGAGATGTGACCTGGTCAGTGTGATAAAGAAACTAGAGAAAACTCTCTGCAGCATCTCAACTAACCTCCACCCCTTCCCTCTCCCTTTTCTCTATCAATTGCCAAACATACAGTTAACTGTTATGATCCGTTGGCACCACTCAGCAGAGATACTCTGgtctcaatttttttctttaatctgctgtttattttttggcTCTGGAATGTCTCATACATACTGTACCTTTAATAAAGCTTATAATTCCTCACATGGTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07884 RAB3D; Ras-related protein Rab-3D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249423 lncRNA upstream 45051 13365684 ~ 13365893 (+) True G210532
TU249234 lncRNA upstream 365111 13044990 ~ 13045833 (+) True G210384
TU249018 lncRNA upstream 589660 12821076 ~ 12821284 (+) True G210209
TU248969 lncRNA upstream 630808 12779249 ~ 12780136 (+) True G210160
TU248885 lncRNA upstream 862441 12546433 ~ 12548503 (+) True G210086
TU249525 lncRNA downstream 22042 13444748 ~ 13445227 (+) False znf653
TU249558 lncRNA downstream 37273 13459979 ~ 13460490 (+) True G210655
TU249616 lncRNA downstream 239468 13662174 ~ 13663501 (+) True G210698
TU249611 lncRNA downstream 242810 13665516 ~ 13669551 (+) True G210694
TU249641 lncRNA downstream 272784 13695490 ~ 13695799 (+) True G210719
XM_026916150.2 mRNA upstream 6018 13399991 ~ 13404926 (+) True tmem205
XM_026916534.2 mRNA upstream 20797 13373236 ~ 13390147 (+) True cnn1b
XM_026916484.2 mRNA upstream 47242 13344994 ~ 13363702 (+) False tlcd4b
XM_026916482.2 mRNA upstream 47242 13344996 ~ 13363702 (+) True tlcd4b
XM_026916483.2 mRNA upstream 47242 13344996 ~ 13363702 (+) False tlcd4b
XM_026915989.2 mRNA downstream 1995 13424701 ~ 13430198 (+) True epor
XM_026916100.2 mRNA downstream 12675 13435381 ~ 13445686 (+) True znf653
XM_026916251.2 mRNA downstream 25543 13448249 ~ 13458730 (+) True tspan35
XM_034310080.1 mRNA downstream 41379 13464085 ~ 13493942 (+) False zgc:158403
XM_026916842.2 mRNA downstream 52723 13475429 ~ 13493942 (+) True zgc:158403
XR_003402925.2 other upstream 1222355 12158706 ~ 12188589 (+) False arhgap17b
XR_004579334.1 other upstream 1833121 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 1873779 11537047 ~ 11537165 (+) True LOC113528662
TU247338 other upstream 2993063 10372415 ~ 10417881 (+) False G208781
XR_004579399.1 other downstream 53122 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 2390536 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 2495511 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 2717624 16140330 ~ 16145384 (+) False LOC113527983
TU251743 other downstream 3664585 17087291 ~ 17109275 (+) False srl

Expression Profile