RNA id: XM_034310082.1


Basic Information

Item Value
RNA id XM_034310082.1
length 2807
RNA type mRNA
GC content 0.44
exon number 4
gene id syngr1a
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7933366 ~ 7950248 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGGCGTTTTGCACTAAACGACACTTGTTTTATATCGAAAATTAGCCATTTTGCTAATGAGTTTCCGTTTCTATCCCGTTACTGAGGAGAAAGCGCACGAGTTTCGTGGCACTCGCACGCGCCTGCAGTCACGCGGACGCGCTCTCGTGCTGCTCTTCCCGCCCatgaagagtgagagagagactttagGCTAGCGGCAGACTCGGGGGAGCACATCTCTGCGACACGCGTAAACGAGGAGTAAACGAGGATTCGACTGGACAGTCAGTTTTTTACAGCGCGTCAGCCCATTGAGCTGTTAGGGTAACCTGTATAATAACCTGTGGCATTTGAACTGTTAGTGTTACCTGTATAATAACCTGTATAATAACCCGTGGCGTTTGAGCTGTTAGTGTAACCTGTATAATAACCTGTGGTGTTTGAGCTGTTAGTCTTACCTGTATAACAACCTGTGGTGTTTGAGCTGTTAGTCTTACCTGTATAATAACCTGTGGTGTTTGAGCTGTTAGTGGAGGATAGGTGTAATAACCTATATAATAACCTGTGGGGTTTGACTGGAGGATAGGTATAATAACCTGTGGAGTTTGAGCTGTTCGTGGAGGATAGGTGTAATAACCTATATAATAACCTGTGGGGTTTGACTGGAGGATAGGTATAATAACCTGTGGAGTTTGAGCTGTTCGTGGAGGATAGGTGTAATAACCTATATAATAACCTGTGGGGTTTGACTGGAGGATAGGTATAATAACCTGTGGAGTTTGAGCTGTTAGTGTAACCTGTATAACAACCTGTGGAGTTTGAGCTGTTAGTGTAACCTGTATAATAACCTGTGGCGTTTGAGCTGTTAGTCTTACCTGTATAGTAACCTGTGGTGTTTGAGTTGTTAGTGTAACCTGTATAATAACCTGTGGGGTTTGAGCTGTTAGTCTTACCTGTATAATAACGTGTGGCGTTTGAGCTGTTAGTGTTACCTGTATAATAACCTGTGGAGTTTGAGCTGTTAGTCTTACCTGTATAACAACCTGTGGAGTTTGAGCTGTTAGTGTAACCTGTATAATAACCTGTGGTGTTTGAGCTGTTAGTCTTACCTGTATAATAACCTGTGGAGTTTGAGCTGTTAGTCTTACCTGTATAATAACCTGTATAATAACCTGTATAATAACCTGTATAATAACCTGTGGCGTTTGAGCTGTTAGTCTTACCTGTATAGTAACCTGTGGTGTTTGAGTTGCTAGTGTAACCTGTATAATAACCTGTGGGGTTTGAGCTGTTAGTGTAACCTGTATAATAACGTGTGGCGTTTGAGCTGTTAGTGTTACCTGTATAATAACCTGTGGAGTTTGAGCTGTTAGTCTTACCTGTATAACCACCTGTGGGGTTTGAGCTGTTAGTGTAACCTGTATAATAACCTGTGGGGTTTGAGCTGTTAGTGTAACCTGTATAATAACCTGTGGTGTTTGAGCTGTTAGTGTTACCTGTATAATAACCTGTGGAGTTTGAGCTGTTAGTGTAACCTGTATAATAACTTGTGGCGTTTGAGCTGTTAGTGTTACCTGTATAGTAACTTGTGGCATTTAAGCTGTAGTGTAACCTGTATAATAACCTGTGGGAAGCAGAGCGGTGCCAGACTGCAGGAGAATGGATCAGGCATACGGGGCAGGAAAAGCCGGAGGAGCCTTCGATCTGGTATCGTTTATCCAGCAGCCCCAACCTATCCTCCGCCTCGTGTCCTGGATCTTCTCCATCGTGATTTTTGGGTGTATTGCCAATGAGGGCTATGTGAACCGACCTGATGCAGAGGAGGAGTACTGCATCTTTAACCGTAACCAGAATGCCTGTAACTACGGTGTGACTATGGGCTCTCTGGCCTTTCTCACCTGTCTTGCCTTCTTGGCCTTGGACGCCTATTTCCCACAAATCAGTGGAGTCAAAGACCGTAAGAAAGTCGTTCTGGCAGACGTCAGCTTCTCGGCCGTCTGGGCCTTCATGTGGTTTGTGGGCTTCTGTttcctgaccaatcagtggCAGGTGACCAATCCTGAAGACAACCCCTTAAACGAGGGTGCAGATGCAGCAAGAGCAGCCATCACATTTTCCTTCTTCTCCATCTTCACATGGGGTGCGCTAACGTTTCTTGCCATGGAGCGTATGAAGAGAGTTTCATTTGAAGAGGAGTACAACAAACTGTTCACCCCTCAGCCTCCTCCCCCATTTGTCTAACATGCTACACACTTATACAAGCACAGGGAACAGGTGCTGGTGTCCATCCACTGTGAAGccatttccctctctctctctctctctctctctctgtggtatGATATTCACACACTAAGAGGGATATCTTGGAAATAtatcacttttacacacacaatccGATCTGGTCTGAAGTCAGGAATTGCGTGAGGGAAATGTAGAGTATGTTGACTGAAATACTGTGAAAGAAAATACCATTTGCACAGAATGCCAGTGTTGATCATGGGCTGGTAGATAGTGTTTTTATTCTTGAAGTCACAATTAGAGACacgtaaatataataatatattatacactcaccggcAACTTtcacaggaacacctgtacacctgctcattcatgtaattatccattccgctaatcatgtggcagcagcacaatgcataatgCATGGACTTTTTACAATTTTCAACTATTCAGTTTCACTGAGCCTGTCCCTTCTGTAACCtcggattcctgttcttggcagacaggagtggaacccgatgtggtcttctgctgttgtaacccatccacctcaaggttcagtgtgctatgctttctgagatgct

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245704 lncRNA upstream 77477 7855431 ~ 7855889 (+) True G207483
XR_003402956.1 lncRNA upstream 241697 7686051 ~ 7691669 (+) True LOC113528563
TU245526 lncRNA upstream 365553 7564303 ~ 7567813 (+) True G207309
TU245323 lncRNA upstream 404628 7444823 ~ 7528738 (+) True G207158
TU245322 lncRNA upstream 489613 7443069 ~ 7443753 (+) True G207157
TU245778 lncRNA downstream 61295 8008196 ~ 8008411 (+) True trnas-cga_1
TU245802 lncRNA downstream 87024 8033925 ~ 8035373 (+) True G207570
TU245829 lncRNA downstream 173551 8120452 ~ 8143237 (+) True LOC117599010
XR_004579452.1 lncRNA downstream 173552 8120453 ~ 8142645 (+) False LOC117599010
TU245851 lncRNA downstream 211043 8157944 ~ 8158181 (+) True G207610
XM_026916785.2 mRNA upstream 1855 7884149 ~ 7931511 (+) True fam171a2a
XM_026917203.2 mRNA upstream 53302 7860224 ~ 7880064 (+) True itga2b
XM_026916612.2 mRNA upstream 435833 7483781 ~ 7497533 (+) True LOC113528203
XM_034309664.1 mRNA upstream 516570 7407560 ~ 7416796 (+) False dhrs7b
XM_026916959.2 mRNA downstream 6893 7953794 ~ 7955245 (+) True tcap
XM_026917299.2 mRNA downstream 63632 8010533 ~ 8027891 (+) True itgb3a
XM_034310185.1 mRNA downstream 84780 8031681 ~ 8042803 (+) True mettl2a
XM_034310023.1 mRNA downstream 100525 8047426 ~ 8062595 (+) True tlk2
XM_034310024.1 mRNA downstream 100525 8047426 ~ 8062595 (+) False tlk2
TU245701 other upstream 79857 7853191 ~ 7853509 (+) True G207480
trnac-gca_21 other upstream 633682 7299613 ~ 7299684 (+) True trnac-gca_21
trnac-gca_18 other upstream 660835 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 817431 7108178 ~ 7115935 (+) False LOC113528597
XR_003402939.2 other upstream 836687 7084441 ~ 7096679 (+) False eftud2
trnas-cga_1 other downstream 61285 8008186 ~ 8008267 (+) False trnas-cga_1
XR_003402909.1 other downstream 949717 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 1114664 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 1997405 9944306 ~ 9979954 (+) False rapgefl1
TU247340 other downstream 2402501 10349402 ~ 10417881 (+) False G208781

Expression Profile