RNA id: XM_026917186.2


Basic Information

Item Value
RNA id XM_026917186.2
length 4829
RNA type mRNA
GC content 0.48
exon number 16
gene id si:ch73-281f12.4
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11578560 ~ 11601412 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCATCCAgcttaatattaaacatttatttacaccaGAGTCTACTCGCCCTGTCCTCTCGCGCATGACGTCATGGTGGGAGCGCGCTCTTGGAGCTGTTCACGTGACTTTTCAAACACGTTCACGCGCTCACTCAGAGACGCTCACTTCTCAACGGACAGCTCGAAGACTTCACTACTCACACTGAGTTCAGGTTCTCAGTGACAGATATAACCAACCTATTTTTGTTTCCTCTTCATTATTTTGGTTGGGAAACTCTTTCTCTCGAGGACAGAAAATTTCTACAGTGAAGTATTTTTCAAGAATGTAGCTGGAGCAGTGGGAAACATCCTGAACTGCCAGTGGAAATGGAAAATAGTGTCAAAGCGGACCACCGCGGTCTGAATCCTCAAACGAGTGGCTCTTAATGTGCATTTATATCAAATTCATAATTATTACACCTTAAAGCGTTCCGTACTTATCCCAGTCGTTGAACGAGGATCCAGTTGTGAGGAAAATGATCTCTGAGGAGCGAAGCAACCAGTTTAACAAGCAAGCGCTCGGTTTTCCTATTGGATTATTAATCCGGTCCCCGAAAAAACGGCTCGCAACGCTGGGGAGGAAGCCCAGCAATGGCTCTCTACAATCCAACACGTCTGAATGCACGACTCGATCTGCTGAGAGTGCTGGTGTCAGGCAGCCAGCCAGAAGTAAGATTCGCCGGCACAACAACAAGCTGGCCACAGTGTTTAACCGGAGTCCTCTTCTGCGGGACAACGGACCAGGGCGCCTTGCAGGAAATCTCGAGTTGAACGATGACCCCACTGAGCTGTCCAGTCAACTGTCTGCCCCAGGGATCTTAAAAATATTTGGCAGTGACATCTGCCAAGGGGCTAATTACAAGAGCGTGCTGGCCACGAATCGCTCCAGCGCCAGGGAGCTGGTTAAAGAGGCCCTTGAGAGaTACTGCCTTGAAAAGGAAGATCCAGATGCATATGTCCTCTGTGATGTAATTGGGCGGACTGGAGTAGCCCACCAGTGGCAGACAGAGTGCCTTCGGGTCATTGGTGACAACGAGAAACCCCTCATACTACAGTCCCTTTGGAAACCCAAAGAAGGATTCTGCAGAAGGTTCGAGATCCACAAAAGAACAAATATTGAAGCTCGTAATGccaaagacagagacacaatCACTGCAGGCCTCAATGCCCATGTGCGGAAGCTACAGAAAGTCCATTCAAGGGTTACGTCACTCTTTGTGGATGGGAGCAGTGGGGATATGGACAGCGTCGGTATCTGGAGGAGCCTGAGTGACATGGACCTCTCTGCCATGGGTAAGGAGGCCTGCAGGGCTAATAAAGGAGGCACTCTGCAGGAGGATCCGGAGGCTGAAGCTGACTTGGAGGGACGCTGCCTCATCACAGAGAAGGAAGAGACGGAAAGCAGTGatgacaacacaacacagtacTCCATCCACCCACCGTTTGATTTTCCCTACTTTCTTCTCCTTCAAGGTTACAGCCACAGACAAGACTTTGTGATCTACCTGATGAGTGGGAACAGCTGTGTGTTTGGCTGCTGTGCTGggcatggtgaggatggagagcagttgaaggtggatgttgtgCTCTATGCCCCTGATGTGCTTCCCCAGCACTGCTGCGTGCAGCACCTGGATGTTCCCAGAACCCAAGCTGATGGTAGCAGGAGAACTTCAACCCTACTAAAGCCCCTCCATGGAGCCTCCGTAACCCACAACGGTGTGCAGTTAAAGGGCGAAGCTGAACTCTTTCCAGGTGACCTAATAGGCTTGGGCCAGCATTACCTCTTCATGTTTAAGGACCCCACAGCACCTGACGTCCAGCGGATACCTACCTGGATGGCCAGTCTTTCTCCCCCAGCTTCCGCCTCACCCTGTAATGCCTGTGGTTCCTCTGTAAGAAGGCACAGGACCAGCAGGAGGGTCCCAGCCTGCTGGAGGGACCCGGACGAGAGGGTGCTTTCTCTTACCTATGAACTGCACCAAGAGGACCAGGTGCTGGAGAAGATCCTCACCATGGTGGACCCTAGAGGACCACAGCCCAAATTAATTCCGGCCTTCCTGCTCTGTTTGTGCATTCAGCATTCGGCTGCTAGCTGGGAGATGACAAACTTCCGCAAACTGTTGCTGCAATTCGCAAACAAGATCCAGCTTGCCATGTGGGAGAGAACAAAAGAGCTTGCAGCGCTTCAGCCAGACAATGGAGCAGGAGACGGACAGCCAGAGACGGAGGCGATTTGTCTCTTGAGCATGGCTGAGCTGATCCCAGGCCTGCAGCCACTCGTGTTATGGATGGCCAACTCCATTGAACTGTTGCATTTCATTCAGCATGAGGTGCCCCTTCTCCTGCCATGGACACAGCAAGATGAAGAGCAGGACAAAGAATTGTTAAATTCTCAGATCTTGTCTACACGTACTGCCAGTGAGGAGGCCATGACTGTCCTAGAGGAAGTCATCATGTTCACTTTCCAGCAGACTGTCTATTACCTTACAAGAAGATTGTATTCAGTGCTACCAGGATTGCTAGATAGTAACCCTTTCTCTGAGAATGGACAGCTGCGCATGCCTGTGGGTGTCAGCAACATTCTGGATGTCCTAAAGGAGGCATTGCAGCTGCTCAACACCTTTGAGGTTCACTCAGAGATATCCTCACAGCTCTTGGCCTATCTCTTCTTCTTCACCAATGCCTCACTCTTCAACATCCTTATGGAGAGAGGTTCAGGAGGTGGGTTCTATCAGTGGTCCAGAGGAGTACAGATCCGAGCCAACCTAGATTTATTGATGGACTGGACCCAGAGTGTTGGTTTGGGCGACCTGGCAGCGGAGTTCTTCCAGAAACTCTCCTCAGCGGTCAACCTACTGGCCACCCCTAAGGAGAATTTACTACAGaCCTCCTGGCTGTCTCTTAGAGCTGAGTTCCCTCACCTCAATCCAGCACAGCTTCATCATATGCTGAGAGAATACAGCTCCAGCAGGGCCTGTCCCTCCTGCTGGACCCCCTCCCCAGATGAAGCAGAATCTGCCCTCCAAACCTCTGAAATTCTGGAGAGCTTCGACAATCATCCTCCACTTATCCTGCCCAACAGCACCTTTCACTTGGAGCTGGGGAAGCCCATCACAGAGCTTGCTTTCTTGTCCCACCTTAAGAGCCTGCAGGAGTTCATCCACAACCTCCCTATCAACCAGATACAAAATGAACCACAACCACTGCAGGACAACAGCACTGACCTGATGGAAGCTACACAAATAGCATCTTCCCCTTCCAGCTCAGAACTGGAGTGCCTTGGGTCCATCAAAGCCACCAGTCCAACCACTCAATGTGGTTATATAGCAGAGCAACAGCAGTGCTTGTCTGCCTCACCTCCTCAGCTCAGAGGCTTCCACAATGCTCTAGGTTCCTATGAAGCTCTCTTGTCTCAGAAGCTGAAGAGCCTGGAGCTCCAGAACCGCTTGCCTGGGGAAACAGACCTGCGTGCACACAAGAGCCTGGCCTTGGACCCGTCCTGCCTACTCACCCCACCCAACACACCCCAAGGCCTGGAGCTCTCTGAACTCGAGGCCAGCCTACAAGAACAGGCGACACAAAACACCAAAGaGAATGGTCTTAGAGGAAATgcagatgagatgagagaaaTAGAAGAGGATGAGGACGAGCGAGATGAGGTGTTCACAGTAGATGTGTCAAGAGGACCTCATGGCCTCGGCCTGGCGCTGGTGGACGGACTGAAATCTCCACTGGGGATGAATGGGATATACATAAAGTCAGTAGTGCCAGGCTCGCCAGCTGCTCAGTGCCAGAAGCTCAGGCTTGGTGATCGTATCCTGGCTGTGAACGGAGTCAGTCTTGTAGGCATGGACTACCAGATTGGTAGGGAGATCATCCGGACATCAGGAGATTCTCTCCGGTTGCTAGTGGCCAAAACTGAAGCCAGAAGCAGTGGCAGGAGCTCCAGCACCAGATGCTAAAACAGTGGGGGACTCTCCTGTTTCCACTAAGGGTTTTCAGGACAAACTATTGGACTTTTTGTTCTTCCACCACCAAAATCAGACCTTTTACTCTTCCGAGCTGCTGGCTGAGGTCCTcagacttttgtttttaaaccaaaaaaaaaaatttcattggGAGTATCAATGGAATACCaaataaaataccaaaaattTACTGAAGACTTTAGTGAGACATGTTTTCTTCTAAgtttgggatttgaactccctGTGGGTGACGTTTTAATCATGTCTGCTTGGATGCAAAAAATGCATACCAAATGACTTAAAACCAATGTTTAATGCAGTAATTTAATTCAGTATTCATCTCTTTGTCATCGGCATTAAATGGAACACAATTCAGGTTTGTCTGGAAATGGCTGTGGCTCAGACTTTATCCTGTTGTTTGTTTGCCTGTTTTAGCATCAGTGAGCAAAACACTTATCCTACATATGCAGACACATATACGCAATATTACAGTAATAtcaatgaaaaattattttatatttttgttcaaTATATGTTAACCAAAGTCTGGCTTGTATCAAGTACTGCTTTTAATTTGTTCTGGTCAGAGCAAAGTATTTCTGTTGAATATGCTCAAAGCCATGGATCAAATTTCCAGCTACTAGTCTTGTCTGTTTCGCAGCAGGCATTAACGAGCATCATGTGATATACATTCAATGGTATATTTTTTCTCAGTGCCAGAGAAACAGTGTTACATCATTACTGATATGGTAGAAAAGTATTTTGTTTGTGATTTGTatattcttttctattctgtgtaatatttaaatgtgaaataaatattgctCATTTTTAAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247909 lncRNA upstream 199760 11280080 ~ 11378800 (+) True cdc42ep4a
TU247679 lncRNA upstream 596267 10971980 ~ 10982293 (+) False LOC117598771
XR_004579343.1 lncRNA upstream 596470 10971721 ~ 10982090 (+) True LOC117598771
XR_004579342.1 lncRNA upstream 596482 10971721 ~ 10982078 (+) False LOC117598771
TU247667 lncRNA upstream 631019 10943255 ~ 10947541 (+) True G209069
TU248035 lncRNA downstream 16623 11618035 ~ 11618234 (+) True G209390
TU248037 lncRNA downstream 32500 11633912 ~ 11634481 (+) True G209392
TU248059 lncRNA downstream 107316 11708728 ~ 11708936 (+) True G209410
XR_003402931.2 lncRNA downstream 206849 11808261 ~ 11822910 (+) True LOC113528367
TU248481 lncRNA downstream 418451 12019863 ~ 12021132 (+) True G209775
XM_026917192.2 mRNA upstream 737 11567119 ~ 11577823 (+) True luc7l3
XM_026917191.2 mRNA upstream 737 11567120 ~ 11577823 (+) False luc7l3
XM_026916035.2 mRNA upstream 17731 11538334 ~ 11560829 (+) False unm_sa1261
XM_026916034.2 mRNA upstream 17731 11546351 ~ 11560829 (+) True unm_sa1261
XM_026916080.2 mRNA upstream 42868 11531521 ~ 11535692 (+) True atp5pd
XM_026916066.2 mRNA downstream 24870 11626282 ~ 11633673 (+) True gcat
XM_034310071.1 mRNA downstream 33913 11635325 ~ 11642057 (+) True mcm5
XM_026916691.2 mRNA downstream 46737 11648149 ~ 11657127 (+) True foxred2
XM_034310072.1 mRNA downstream 46864 11648276 ~ 11657127 (+) False foxred2
XM_026916026.2 mRNA downstream 56117 11657529 ~ 11662120 (+) True ankrd54
XR_004579334.1 other upstream 737 11567119 ~ 11577823 (+) False luc7l3
XR_003402977.1 other upstream 41395 11537047 ~ 11537165 (+) True LOC113528662
TU247340 other upstream 1160679 10349402 ~ 10417881 (+) False G208781
TU247338 other upstream 1160679 10372415 ~ 10417881 (+) False G208781
TU247339 other upstream 1160679 10412984 ~ 10417881 (+) True G208781
XR_003402925.2 other downstream 557294 12158706 ~ 12188589 (+) False arhgap17b
XR_004579399.1 other downstream 1874416 13475828 ~ 13492850 (+) False zgc:158403
trnar-ucu_8 other downstream 4211830 15813242 ~ 15813331 (+) True trnar-ucu_8
TU251011 other downstream 4316805 15918217 ~ 15968759 (+) True G211913
TU251142 other downstream 4538918 16140330 ~ 16145384 (+) False LOC113527983

Expression Profile